YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30262216, gi|...
Organism: Bacillus anthracis str. Ames
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262216, gi|....

Description E-value Query
Range
Subject
Range
gi|80971649 - gi|80971649|gb|ABB52797.1| cassette chromosome recombinase B [Staphylococcus warneri]
215.0 [0..2] [260..6]
gi|98961578 - gi|98961578|gb|ABF59117.1| CcrB [Staphylococcus epidermidis]
215.0 [0..2] [260..13]
gi|98961566, gi|... - gi|98961571|gb|ABF59112.1| CcrB [Staphylococcus aureus], gi|98961566|gb|ABF59109.1| CcrB [Staphyloco...
gi|227853205, gi... - gi|227898446|ref|ZP_04016251.1| cassette chromosome recombinase B [Staphylococcus aureus subsp. aure...
215.0 [0..2] [260..13]
gi|110624459, gi... - gi|98986187|dbj|BAE94484.1| cassette chromosome recombinase B [Staphylococcus aureus], gi|98986168|d...
gi|160367113, gi... - gi|161508304|ref|YP_001573963.1| cassette chromosome recombinase B [Staphylococcus aureus subsp. aur...
gi|76496259 - gi|76496259|gb|ABA26583.1| cassette chromosome recombinase B [Staphylococcus epidermidis]
gi|87126400, gi|... - gi|87160426|ref|YP_492757.1| cassette chromosome recombinase B [Staphylococcus aureus subsp. aureus ...
gi|87160426|ref|... - cassette chromosome recombinase B [Staphylococcus aureus subsp. aureus USA300], cassette chromosome ...
214.0 [0..2] [260..6]

Back

Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKVVGYVR VSTEGQVREG YSLTYQVEEI ERHCIENKLQ LLHIYEDKGI SGATVDEDGL  60
   61 TVEREGLQEL LSDMTCHQVS KVIVLNTSRL WRSDMAKVLI QRELKKHAVD VKAIEQPNYS 120
  121 IYTHDPNDFL VNGMLELLDQ YQRLEIVLKL SRGRKKKAEQ GGYAGGGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1gdtA
Description: gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [169-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGYRVKKGQ KVLEVDTNKA IVVRRLFELR HFCKHWSLTQ LAERLNREGY CTEKGKRFTK  60
   61 VQVKRMLDRE NFYRGVYTYG QIQTNGKHPA II

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.221849
Match: PF07508.4
Description: No description for PF07508.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle