YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256832, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256832, gi|....

Description	E-value	Query Range	Subject Range
SYD_PYRKO - Aspartyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=aspS PE=1 SV=2 SYD_THEKO - Aspartate--tRNA(Asp) ligase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN...	0.0	[4..432]	[1..438]
SYD_PYRHO - Aspartyl-tRNA synthetase OS=Pyrococcus horikoshii GN=aspS PE=3 SV=1 SYD_PYRHO - Aspartate--tRNA(Asp) ligase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NB...	0.0	[4..432]	[1..438]
SYD_PYRAB - Aspartyl-tRNA synthetase OS=Pyrococcus abyssi GN=aspS PE=3 SV=1 SYD_PYRAB - Aspartate--tRNA(Asp) ligase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aspS PE=3 SV=1	0.0	[4..432]	[1..438]
gi\|1136773, gi\|2... - gi\|2129413\|pir\|\|JC4352 aspartate-tRNA ligase (EC 6.1.1.12) - Pyrococcus sp, gi\|1136773\|dbj\|BAA08115.... SYD_PYRKO - (Q52428) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)	0.0	[4..432]	[1..438]
gi\|4388836, gi\|4... - gi\|4388837\|pdb\|1B8A\|B Chain B, Aspartyl-Trna Synthetase, gi\|4388836\|pdb\|1B8A\|A Chain A, Aspartyl-Trn... gi\|4388836, gi\|4... - gi\|4388837\|pdb\|1B8A\|B Chain B, Aspartyl-Trna Synthetase, gi\|4388836\|pdb\|1B8A\|A Chain A, Aspartyl-Trn...	0.0	[4..432]	[1..438]
SYDND_METKA - Aspartate--tRNA(Asp/Asn) ligase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 1... SYD_METKA - Aspartyl-tRNA synthetase OS=Methanopyrus kandleri GN=aspS PE=3 SV=1	0.0	[4..432]	[1..431]
SYD_PYRFU - Aspartyl-tRNA synthetase OS=Pyrococcus furiosus GN=aspS PE=3 SV=1 SYD_PYRFU - Aspartate--tRNA(Asp) ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) G...	0.0	[4..432]	[1..438]
SYD_METJA - Aspartyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=aspS PE=3 SV=1 SYDND_METJA - Aspartate--tRNA(Asp/Asn) ligase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	0.0	[3..432]	[6..438]
SYDND_ARCFU - Aspartate--tRNA(Asp/Asn) ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JC... SYD_ARCFU - Aspartyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=aspS PE=3 SV=1	0.0	[5..432]	[1..430]
SYN_DESAG - Asparagine--tRNA ligase OS=Desulfovibrio alaskensis (strain G20) GN=asnS PE=3 SV=1	0.0	[19..430]	[17..459]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIMKRSLT KECTEKSGKV VSLQGWVKKI RHLGNVSFLL LRDRTGVIQC VLENEFAGFK  60
   61 VDVESIVHVI GEIVETSKTE LGVEVLAHEV KILNGAEPLP FEINKKKLQV GLDQLLNERV 120
  121 LSLRHERTTA IFKVKSTLVQ SFSELLIEND FTRIFTPKIV SQGAEGGANV FKLPYFQKEA 180
  181 YLAQSPQFYK QMMVAGGLER VFEIAPVYRA EHHNSSRHLN EYISLDVELG FIHDFHEVMQ 240
  241 LETDVLRYMF QQVAKNCEKE LQLLQIEVPV ITEIPKITLL EAQEILKSKY CKESPVGDLD 300
  301 TEGEKLLGKY VKETYKSEFV FITHYPKEAR PMYTMPNNEN SAITDSFDLL YKGLEITSGA 360
  361 QRIHNYEMLL DSFKEKGLHP DKFQSYLNTF RYGCPPHGGF GIGLERIVYK LLELSNVREA 420
  421 SAFPRDCTRL IP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	124.0
Match:	1b8aA
Description:	Aspartyl-tRNA synthetase (AspRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits