YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256808, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	631 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256808, gi|....

Description	E-value	Query Range	Subject Range
gi\|218158841, gi... - gi\|218230884\|ref\|YP_002366890.1\| ABC transporter, ATP-binding protein [Bacillus cereus B4264], gi\|21... gi\|30020286, gi\|... - gi\|30020286\|ref\|NP_831917.1\| ABC transporter ATP-binding protein uup [Bacillus cereus ATCC 14579], g...	0.0	[1..631]	[1..631]
gi\|89152991, gi\|... - gi\|89209071\|ref\|ZP_01187535.1\| ABC transporter related [Bacillus weihenstephanensis KBAB4], gi\|89152...	0.0	[1..631]	[1..631]
gi\|49477534, gi\|... - gi\|49477534\|ref\|YP_036311.1\| ABC transporter, ATP-binding protein [Bacillus thuringiensis serovar ko... gi\|52143276, gi\|... - gi\|52143276\|ref\|YP_083556.1\| ABC transporter, ATP-binding protein [Bacillus cereus E33L], gi\|5197674... gi\|196039737, gi... - gi\|196039737\|ref\|ZP_03107041.1\| ABC transporter, ATP-binding protein [Bacillus cereus NVH0597-99], g...	0.0	[1..631]	[1..631]
gi\|42737212, gi\|... - gi\|42781290\|ref\|NP_978537.1\| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987], gi\|4...	0.0	[1..631]	[1..631]
gi\|89203401, gi\|... - gi\|89203401\|ref\|ZP_01182069.1\| ABC transporter related [Bacillus cereus subsp. cytotoxis NVH 391-98]...	0.0	[1..631]	[1..630]
gi\|89334251, gi\|... - gi\|89894803\|ref\|YP_518290.1\| hypothetical protein DSY2057 [Desulfitobacterium hafniense Y51], gi\|893...	0.0	[1..630]	[1..647]
gi\|89101040, gi\|... - gi\|89101040\|ref\|ZP_01173881.1\| ABC transporter, ATP-binding protein [Bacillus sp. NRRL B-14911], gi\|...	0.0	[1..629]	[1..626]
gi\|109645175, gi... - gi\|68209059\|ref\|ZP_00561127.1\| ABC transporter [Desulfitobacterium hafniense DCB-2], gi\|68167057\|gb\|...	0.0	[1..630]	[1..647]
gi\|47018390, gi\|... - gi\|47093258\|ref\|ZP_00231030.1\| ABC transporter, ATP-binding protein [Listeria monocytogenes str. 4b ...	0.0	[1..628]	[1..630]
gi\|255521582 - gi\|255521582\|ref\|ZP_05388819.1\| ABC transporter, ATP-binding protein [Listeria monocytogenes FSL J1-... gi\|254826082 - gi\|254826082\|ref\|ZP_05231083.1\| ABC transporter, ATP-binding protein [Listeria monocytogenes FSL J1-... gi\|46908108, gi\|... - gi\|46908108\|ref\|YP_014497.1\| ABC transporter, ATP-binding protein [Listeria monocytogenes str. 4b F2...	0.0	[1..628]	[1..630]

Back

Predicted Domain #1

Region A:
Residues: [1-553]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMLTVENLS KSYGEKPLFD GLSFSIAEGQ RAGIIGVNGT GKSTLLKIIA GAEIPDTGDM  60
   61 THSRGYTISY LSQQPEFDEQ LTVLEQVFHG DTPLIRLLRD YEKALLHIEK DPSNEKVQEQ 120
  121 LFAVQQRMDA MSVWEANANA KSLLTKLGIT DFTATVGNLS GGQKKRIAMA QCFIETPDLL 180
  181 ILDEPTNHLD HETVEWLEEY LARYTGAVLL VTHDRYFLDR VTNRIFELDN GKLYSYEGNY 240
  241 STFLEAKALR EEQELAQESK RQNLYRRELA WIRRGAKARS TKQKARIQRF EELKGQEGPA 300
  301 AKQSVDIALS GSRLGKKVLE LKDVTKKFGD KTVLNNFNHI VKPGDRIGII GANGSGKSSL 360
  361 LNMLAGKISP DSGEIEVGQT VKIAYYTQEN EEMNLNQRMI EYIKEIAEVI HTTDGKVIGA 420
  421 SQMLERFLFP PHSHGTPLGK LSGGERRRLY LLRILMGEPN VLLLDEPTND LDPQTLTVLE 480
  481 DYLEDFSGVV LTVSHDRYFL DKVVDELFIF TGEGEVREFL GSYTDYLEME KTRELIEKAE 540
  541 VQKEKKVVEE APK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.154902
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [554-631]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQRKRKLSYN EQREWETIED TIAELEEKLE SIGEELANVG SDFTKAQELS EAQQKTEEEL  60
   61 EKTMERWSEL SDIVEGLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1v43A
Description:	Crystal Structure of ATPase subunit of ABC Sugar Transporter
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits