YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256792, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256792, gi|....

Description	E-value	Query Range	Subject Range
CAO_CHLRE - Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2	2.0E-26	[4..118]	[302..420]
gi\|91686245, gi\|... - gi\|91782291\|ref\|YP_557497.1\| vanillate O-demethylase oxygenase subunit [Burkholderia xenovorans LB40...	1.0E-25	[1..112]	[1..118]
gi\|94310750, gi\|... - gi\|94310750\|ref\|YP_583960.1\| Rieske (2Fe-2S) region [Ralstonia metallidurans CH34], gi\|93354602\|gb\|A...	5.0E-25	[2..118]	[45..168]
gi\|42571759 - gi\|42571759\|ref\|NP_973970.1\| CH1 (CHLORINA 1); chlorophyllide a oxygenase [Arabidopsis thaliana]	7.0E-25	[4..115]	[218..335]
gi\|73538170, gi\|... - gi\|73538170\|ref\|YP_298537.1\| Rieske (2Fe-2S) region [Ralstonia eutropha JMP134], gi\|72121507\|gb\|AAZ6...	7.0E-25	[1..115]	[1..121]
gi\|46130254, gi\|... - gi\|81300845\|ref\|YP_401053.1\| hypothetical protein Synpcc7942_2036 [Synechococcus elongatus PCC 7942]...	8.0E-25	[2..118]	[8..136]
gi\|56687026, gi\|... - gi\|56752067\|ref\|YP_172768.1\| hypothetical protein syc2058_d [Synechococcus elongatus PCC 6301], gi\|5...	9.0E-25	[2..118]	[14..142]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQTKDKIKV MRAEDLPIQI GKEVQMKGMS IALFRLSNGD IRAVENRCPH KNGPLAEGIV  60
   61 SGEFVFCPLH DWKISLLTGE VQKPDDGCIQ TYEVEVINGD IYIYICNLQK EASPLASF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1uliA
Description:	Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on other nitrogenous compounds as donors	2.33298374587379	bayes_pls_golite062009
nitrite reductase [NAD(P)H] activity	2.18632582604499	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	1.78256971480497	bayes_pls_golite062009
catalytic activity	1.11718133018478	bayes_pls_golite062009
oxidoreductase activity	0.194421372741844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: