YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262095, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	491 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262095, gi|....

Description	E-value	Query Range	Subject Range
GATA_PELCD - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1...	0.0	[8..487]	[1..481]
gi\|95132536, gi\|... - gi\|95931418\|ref\|ZP_01314126.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Desulfuromonas acetox...	0.0	[8..489]	[1..483]
GATA_GEOUR - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 ...	0.0	[8..487]	[1..481]
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 364... GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1	0.0	[8..491]	[1..476]
GATA_GEOSE - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus stearothermophilus GN=gatA PE=3 SV=1	0.0	[8..490]	[1..484]
GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus (strain HTA426) GN=gatA PE... GATA_GEOKA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus GN=gatA PE=3 SV=1	0.0	[8..490]	[1..484]
GATA1_CLOAB - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM... GATA1_CLOAB, GAA... - Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1, (Q...	0.0	[8..485]	[1..479]
GATA_THETN - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1 GATA_CALS4 - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	0.0	[8..488]	[1..481]
GATA_DEHMC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides mccartyi (strain CBDB1) GN=gatA PE=...	0.0	[9..489]	[3..484]
gi\|241884962, gi... - gi\|241902708\|ref\|ZP_04787440.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Thermoanaerobacter b... GATA_THEP3 - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33...	0.0	[8..488]	[1..481]

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Predicted Domain #1

Region A:
Residues: [1-491]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMQFNTLLQ KELTIHDIQT AMEDEKLTSK ELVMYYLHRI AKYDQDGPKI NSILEINPDA  60
   61 IFIAEALDHE RKIKGIRGPL HGIPVLLKDN IETNDSMHTS AGTIALEQHI SSEDAFLVTK 120
  121 LREAGAVIIG KANMTELANG MSFDMWAGYS ARGGQTINPY GTGEDDMFVG GSSTGSAIAV 180
  181 AANFTVVSVG TETDGSILSP AVQNSVVGIK PTVGLISRRG IIPFTYSQDT AGPFARTVTD 240
  241 AAILLGSLTV VDEKDVATHK SKGIAEHDYT KYLDVNGLNG AKIGVYSNAP KEYYESGEYD 300
  301 EKLFKKTIEV LRSEGATVVE DIDIPSFHRE WSWGVSLYEL KHSLDNYLSK LPSTIPVHSI 360
  361 SELMEFNENI AERALKYGQT KLERRKDVPN TLRNPEYINA RLEDIYFSQE QGIDFALEKY 420
  421 NLDAILFPSY IGSTICAKAG YPSIAIPAGY MEGGRPFGIT LASTAFSEGT LIKLAYAFEQ 480
  481 ATNHRKIPGL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.522879
Match:	1m21A
Description:	Peptide amidase Pam
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.42914157198604	bayes_pls_golite062009
ligase activity	3.16753436373904	bayes_pls_golite062009
binding	1.24905380693412	bayes_pls_golite062009
catalytic activity	0.906509857495572	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.301483171038292	bayes_pls_golite062009
protein binding	0.276132955069873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: