YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256594, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256594, gi|....

Description	E-value	Query Range	Subject Range
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	3.0E-57	[4..306]	[532..833]
gi\|71733898, gi\|... - gi\|71733898\|ref\|YP_274918.1\| ribose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. p...	1.0E-44	[6..304]	[326..623]
gi\|78389830, gi\|... - gi\|78493291\|ref\|ZP_00845525.1\| inner-membrane translocator [Rhodopseudomonas palustris BisB18], gi\|7...	2.0E-42	[14..320]	[353..673]
gi\|67984923, gi\|... - gi\|69291807\|ref\|ZP_00619355.1\| inner-membrane translocator [Kineococcus radiotolerans SRS30216], gi\|...	2.0E-41	[3..323]	[305..655]
gi\|87316726, gi\|... - gi\|87316726\|ref\|ZP_01097740.1\| COG4177: ABC-type branched-chain amino acid transport system, permeas...	1.0E-40	[1..330]	[1..333]
gi\|46312619, gi\|... - gi\|78064750\|ref\|YP_367519.1\| branched chain amino acid ABC transporter ATPase/inner membrane protein...	1.0E-39	[1..322]	[1..325]
gi\|91689701, gi\|... - gi\|91785747\|ref\|YP_560953.1\| branched chain amino acid ABC transporter ATPase/inner membrane protein...	2.0E-39	[1..330]	[1..333]
gi\|67104306, gi\|... - gi\|67662201\|ref\|ZP_00459491.1\| inner-membrane translocator:ABC transporter [Burkholderia cenocepacia... gi\|254246684, gi... - gi\|254246684\|ref\|ZP_04940005.1\| ABC branched-chain amino acid family transporter [Burkholderia cenoc...	2.0E-39	[1..322]	[10..334]
gi\|84363363, gi\|... - gi\|84363363\|ref\|ZP_00987951.1\| COG4177: ABC-type branched-chain amino acid transport system, permeas...	4.0E-39	[1..322]	[1..325]
gi\|111615484, gi... - gi\|111615484\|ref\|ZP_01402545.1\| ABC-type branched-chain amino acid transport system permease compone...	4.0E-39	[12..319]	[346..658]

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Predicted Domain #1

Region A:
Residues: [1-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSTSNRIK VYFGVCMLIC LSVFPFVNDS RSLLILFTQI FIFAIFAMSF DVLLGYTGIV  60
   61 SFGHCMFFGI GAYGVALLFD RQGVSITNFF IGIVAAIIIS AIVSYIIGLL SLRLKSHFYA 120
  121 MLTLAISQLF FVLAEKWRGL THGGDGFTFG VPDVFRDRFT LYYVTLICLL IIFVLLRLFT 180
  181 KSSIGKVLKA ISQNEQRVEA LGYKVLHYKI IASVVAGVVA AISGGLFVIT LRFVNTTVFS 240
  241 IEMTLNALLM TMIGGVGTLI GAIAGAGIIE SLKYYLSELA TEYPIFERWT IILGLLYIIV 300
  301 LLVFPKGLVG TVKGLKNMKR NKKEKRAEVE QNV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits