YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261953, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261953, gi|....

Description	E-value	Query Range	Subject Range
GATA_PELCD - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1...	0.0	[67..533]	[2..481]
GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 364... GATA_METMA - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1	0.0	[71..535]	[6..473]
gi\|52143496, gi\|... - gi\|52143496\|ref\|YP_083334.1\| amidase [Bacillus cereus E33L], gi\|51976965\|gb\|AAU18515.1\| glutaminyl-t...	0.0	[1..536]	[1..536]
gi\|95132536, gi\|... - gi\|95931418\|ref\|ZP_01314126.1\| glutamyl-tRNA(Gln) amidotransferase, A subunit [Desulfuromonas acetox...	0.0	[68..536]	[3..485]
gi\|49481699, gi\|... - gi\|49481699\|ref\|YP_036093.1\| amidase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|49333...	0.0	[1..536]	[1..536]
GATA_METBF - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN...	0.0	[71..535]	[5..472]
GAA2_CLOAB, GATA... - Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1, (Q... GATA2_CLOAB - Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM...	0.0	[67..526]	[2..476]
GATA_DEHMC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides mccartyi (strain CBDB1) GN=gatA PE=...	0.0	[65..536]	[1..486]
GATA_METAC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1 GATA_METAC - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM...	0.0	[71..535]	[6..473]
GATA_DEHM1 - Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides mccartyi (strain ATCC BAA-2266 / KC...	0.0	[65..536]	[1..486]

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Predicted Domain #1

Region A:
Residues: [1-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWVKVTLS IAGGIVLLAC AGGYYVYKNY FPKEPERIVY DKERVLQPIH NQLKGINIEN  60
   61 VKIKEKEVVN ATVDELQKMI DDGKLSYEEL TSIYLFRIQE HDQNGITLNS VTEINPNAME 120
  121 EARKLDQERS RNKKSNLYGI PVVVKDNVQT AKVMPTSAGT YVLKDWIADQ DATIVKQLKE 180
  181 EGAFVLGKAN MSEWANYLSF TMPSGYSGKK GQNLNPYGPI MFDTSGSSSG SATVVAADFA 240
  241 PLAVGTETTG SIVAPAAQQS VVGLRPSLGR VSRTGIIPLA ETLDTAGPMA RTVKDAATLF 300
  301 NAMIGYDEKD VMTEKVKDKE RIDYTKDLSI DGLKGKKIGL LFSVDQQDEN RKAVAEKIRK 360
  361 DLQDAGAILT DYIQLNNGGV DNLQTLEYEF KHNVNDYFSQ QKNVPVKSLK EIIAFNKRDS 420
  421 NRRIKYGQTL IEASEKSTIT KDEFEKVVQT SQENAKKELN KYLVEKGLDA LVMINNEEVL 480
  481 LSAVAGYPEL AVPAGYDNNG EPVGAVFVGK QFGEKELFNI GYAYEQQSKN RKPPKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1m21A
Description:	Peptide amidase Pam
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.42914157198604	bayes_pls_golite062009
ligase activity	3.16753436373904	bayes_pls_golite062009
catalytic activity	0.906509857495572	bayes_pls_golite062009
binding	0.644139061567672	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.301483171038292	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: