YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261939, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261939, gi|....

Description	E-value	Query Range	Subject Range
gi\|49481155, gi\|... - gi\|49481155\|ref\|YP_036076.1\| DNA topoisomerase III [Bacillus thuringiensis serovar konkukian str. 97...	0.0	[1..714]	[1..714]
gi\|42781053, gi\|... - gi\|42781053\|ref\|NP_978300.1\| DNA topoisomerase III [Bacillus cereus ATCC 10987], gi\|42736974\|gb\|AAS4...	0.0	[1..714]	[1..714]
gi\|52143516, gi\|... - gi\|52143516\|ref\|YP_083320.1\| DNA topoisomerase III [Bacillus cereus E33L], gi\|51976985\|gb\|AAU18535.1...	0.0	[1..714]	[1..714]
gi\|30019974, gi\|... - gi\|30019974\|ref\|NP_831605.1\| DNA topoisomerase III [Bacillus cereus ATCC 14579], gi\|29895519\|gb\|AAP0...	0.0	[1..714]	[1..714]
gi\|152024019, gi... - gi\|89203289\|ref\|ZP_01181972.1\| DNA topoisomerase III [Bacillus cereus subsp. cytotoxis NVH 391-98], ...	0.0	[1..714]	[1..714]
gi\|56380192, gi\|... - gi\|56420350\|ref\|YP_147668.1\| DNA topoisomerase III [Geobacillus kaustophilus HTA426], gi\|56380192\|db...	0.0	[1..713]	[1..714]
gi\|68511118, gi\|... - gi\|68562719\|ref\|ZP_00601962.1\| DNA topoisomerase III [Rubrobacter xylanophilus DSM 9941], gi\|6851111...	0.0	[1..706]	[1..691]
gi\|25292778 - pir\|\|C84073 DNA topoisomerase III topB [imported] - Bacillus halodurans (strain C-125) gi\|10176010, gi\|... - gi\|15615949\|ref\|NP_244253.1\| DNA topoisomerase III [Bacillus halodurans C-125], gi\|10176010\|dbj\|BAB0...	0.0	[3..713]	[5..717]
gi\|68244665, gi\|... - gi\|69262568\|ref\|ZP_00608758.1\| DNA topoisomerase III [Magnetococcus sp. MC-1], gi\|68244665\|gb\|EAN268...	0.0	[1..696]	[1..733]
gi\|134298838, gi... - gi\|88944507\|ref\|ZP_01147742.1\| DNA topoisomerase III [Desulfotomaculum reducens MI-1], gi\|88925805\|g...	0.0	[1..714]	[1..700]

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Predicted Domain #1

Region A:
Residues: [1-622]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIIAEKPD QGLALVSQFK YRRKDGYLEV EANELFPNGA YCTWAIGHLT QLCNPEHYHA  60
   61 EWKKWSLDTL PMIPERFQFE VTKSKYKQFN VVKQLLHNPQ VTEIIHAGDA GREGELIVRN 120
  121 IINLCNVQKP MKRLWISSLT KQAIYQGFKN LLDESDTINT YYEAYTRSCA DWVVGMNASR 180
  181 VFSILLKKKG MNDVFSAGRV QTPTLALIVK REKEIENFKS EPFWEVFATF NIEGKKYDGK 240
  241 WEKDNESRLQ DPDMANKIAA FCQGKPAVVK EMKTERKEFQ PPLLFNLSSL QATANKAFKF 300
  301 SPKKTLDITQ ALYQKGIVSY PRSDSNYVTQ GEAATFPDIL QKLSQFDEYK GLLPAPVESI 360
  361 MNNKRYVNEK KVTDHYAIIP TEQVTNPSRL SGDEKKIYDM IVRRLIAAHY EVAIFDYTTI 420
  421 VTLVDERAEF ISKGKQQIQE GWRKVIFQDD KDDETILPIV AEGEEGKVVK VKVKEGKTQP 480
  481 PKRYTEGQLI TLMKTAGKYL ENEELEKVLK KTEGLGTEAT RAGIITMLKD RKYIDVKKNQ 540
  541 VYATDKGKVL ITAIGDKILA SPEMTAKWEQ RLAEIGEGTA SPATFMEQTK KLSAKIIEDA 600
  601 VEMSEKWDFT GLHVESIERK GS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	178.0
Match:	2o19A
Description:	No description for 2o19A was found.

Predicted Domain #2

Region A:
Residues: [623-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFTTGKKVGS CKKCDGDVID KSTFYGCSNY NTTQCDFTIS KKILSKTISQ KNMTKLLKGE  60
   61 KTDLIKGFKK GEKTFDAKLE WKDNKINFVF EN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.298	b.50.1	Acid proteases
View	Download	0.457	b.3.1	Starch-binding domain
View	Download	0.252	d.198.1	Type III secretory system chaperone
View	Download	0.235	d.199.1	DNA-binding C-terminal domain of the transcription factor MotA
View	Download	0.255	d.16.1	FAD-linked reductases, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits