YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261928, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261928, gi|....

Description	E-value	Query Range	Subject Range
gi\|15024496, gi\|... - gi\|15894824\|ref\|NP_348173.1\| pyrimidine-nucleoside phosphorylase [Clostridium acetobutylicum ATCC 82... gi\|25286848 - pir\|\|F97090 pyrimidine-nucleoside phosphorylase [imported] - Clostridium acetobutylicum	0.0	[1..433]	[1..433]
gi\|14247909, gi\|... - gi\|15925126\|ref\|NP_372660.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|13701930, gi\|... - gi\|15927710\|ref\|NP_375243.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|253733030, gi... - gi\|253733030\|ref\|ZP_04867195.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|25286849 - pir\|\|E90007 pyrimidine nucleoside phosphorylase [imported] - Staphylococcus aureus (strain N315)	0.0	[1..433]	[14..446]
gi\|160369151, gi... - gi\|161510342\|ref\|YP_001576001.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. a... gi\|87127252\|gb\|A... - pyrimidine nucleoside phosphorylase [Staphylococcus aureus subsp. aureus USA300] gi\|253731026, gi... - gi\|253731026\|ref\|ZP_04865191.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|87127252, gi\|... - gi\|87161278\|ref\|YP_494735.1\| pyrimidine nucleoside phosphorylase [Staphylococcus aureus subsp. aureu...	0.0	[1..433]	[14..446]
PDP_STAAB - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pdp PE...	0.0	[1..433]	[1..433]
PDP_STAHJ - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=pdp PE=3 SV=...	0.0	[1..433]	[1..433]
gi\|253315805 - gi\|253315805\|ref\|ZP_04839018.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... gi\|255006924 - gi\|255006924\|ref\|ZP_05145525.2\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au... PDP_STAAM - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdp PE=3... PDP_STAAN - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain N315) GN=pdp PE=1 SV=2 gi\|269203772\|ref... - pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureus ED98] gi\|90430779, gi\|... - gi\|90585659\|ref\|ZP_01241367.1\| Glycosyl transferase, family 3 [Staphylococcus aureus subsp. aureus J... gi\|90427543, gi\|... - gi\|90583420\|ref\|ZP_01239177.1\| Glycosyl transferase, family 3 [Staphylococcus aureus subsp. aureus J...	0.0	[1..433]	[1..433]
gi\|52143529, gi\|... - gi\|52143529\|ref\|YP_083300.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus E33L], gi\|51976998... gi\|42736967, gi\|... - gi\|42781046\|ref\|NP_978293.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus ATCC 10987], gi\|42... gi\|218896861, gi... - gi\|218896861\|ref\|YP_002445272.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus G9842], gi\|218... gi\|195993903, gi... - gi\|196033469\|ref\|ZP_03100881.1\| pyrimidine-nucleoside phosphorylase [Bacillus cereus W], gi\|19599390...	0.0	[1..433]	[1..433]
PDP_STAAR - Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus (strain MRSA252) GN=pdp PE=3 SV=1	0.0	[1..433]	[1..433]
gi\|16801167 - gi\|16801167\|ref\|NP_471435.1\| pyrimidine-nucleoside phosphorylase [Listeria innocua Clip11262] gi\|16414615, gi\|... - pir\|\|AC1695 pyrimidine-nucleoside phosphorylase homolog pdp [imported] - Listeria innocua (strain Cl...	0.0	[1..433]	[1..433]
gi\|21283789, gi\|... - gi\|21283789\|ref\|NP_646877.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. aureu... gi\|251812293, gi... - gi\|251812293\|ref\|ZP_04826766.1\| pyrimidine-nucleoside phosphorylase [Staphylococcus aureus subsp. au...	0.0	[1..433]	[14..446]

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Predicted Domain #1

Region A:
Residues: [1-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMVDIIAKK RDGKELTTEE IKFFINGYTD GSIPDYQVSA LAMAIFFKDM TDRERADLTM  60
   61 AMVESGETID LSAIEGIKVD KHSTGGVGDT TTLVLGPLVA ALDVPVAKMS GRGLGHTGGT 120
  121 IDKLEAVEGF HVEITKEQFI DIVNRDKVAV IGQTGNLTPA DKKIYALRDV TGTVNSIPLI 180
  181 ASSIMSKKIA AGADAIVLDV KTGAGAFMKT EEDAKELAHA MVRIGNNVGR QTMAVISDMS 240
  241 QPLGFAIGNA LEVKEAIDTL KGEGPEDLTE LVLVLGSQMV VLAKKANTLE EAREMLIEVM 300
  301 KNGKATEKFK EFLNNQGGDS SIVDNPEKMP QAKYVIDVPA KTSGVISNIV ADEIGIAAML 360
  361 LGAGRATKED EIDLAVGLML RKKVGDAVKE GEPFVTIYAN RENVEDVKAK IYENISIAET 420
  421 AVAPKLVHTV ITD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.0
Match:	1brwA
Description:	Pyrimidine nucleoside phosphorylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits