YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261921, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261921, gi|....

Description	E-value	Query Range	Subject Range
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	3.0E-50	[1..312]	[1..323]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	7.0E-50	[1..312]	[1..323]
GPDA_LEPBL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	1.0E-49	[1..312]	[1..323]
gi\|238856808, gi... - gi\|238856808\|ref\|ZP_04647068.1\| glycerol-3-phosphate dehydrogenase [Enterococcus faecalis TUSoD Ef11... gi\|229305101, gi... - gi\|229549832\|ref\|ZP_04438557.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN... gi\|227073624, gi... - gi\|227518935\|ref\|ZP_03948984.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis GN=gpsA PE=3 SV=1 gi\|229309209, gi... - gi\|229545641\|ref\|ZP_04434366.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... gi\|227553554, gi... - gi\|227553554\|ref\|ZP_03983603.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f...	2.0E-49	[2..312]	[4..327]
gi\|241879183, gi... - gi\|241908479\|ref\|ZP_04793047.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Desulfovibrio vulgar... GPDA_DESVH - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC ...	3.0E-49	[1..312]	[1..322]
GPDA_LEPBJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	3.0E-49	[1..312]	[1..323]
GPDA_OCEIH - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Oceanobacillus iheyensis GN=gpsA PE=3 SV=1 GPDA_OCEIH - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 113...	2.0E-48	[2..312]	[3..322]
GPDA_DESVV - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) ...	2.0E-48	[1..312]	[1..322]
GPDA_LACBA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN...	8.0E-48	[2..312]	[4..328]
gi\|48823891 - ref\|ZP_00285354.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Enterococcus faecium] gi\|69249418, gi\|... - gi\|69249418\|ref\|ZP_00604967.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Enterococcus faecium DO...	8.0E-48	[2..312]	[4..327]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILVLGAGG VGGFFGGRLV EKGEDVTFLV RSKRKKQLEE RGLVIRSVNG DFSFQPKLIT  60
   61 KEDRTAPFDV ILFSTKAYHL NEAIQDLKPF VGENTVIIPL LNGIAHLSLL QKELGEDKVI 120
  121 GGLCFIETTL NDEGEIVQTS AANRLVFGEM KSQHAERVKH ISKAFAGTKS SFVLSENIMQ 180
  181 DMWHKYLFIT VMSGVTTLMR APIGPIRESE GGHDFIQNLF KECVQIMRCI GAPVKDDIVK 240
  241 EHMKTIDKIS YDMKSSMQRD MEKGSSVEGK HLQGYLLDVA EQFSIEAPLL GAVYQNLKVY 300
  301 EEMALNRSEI QLDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	2ew2A
Description:	Crystal Structure of the Putative 2-Dehydropantoate 2-Reductase from Enterococcus faecalis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits