YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261878, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261878, gi|....

Description	E-value	Query Range	Subject Range
gi\|163939679, gi... - gi\|89205141\|ref\|ZP_01183713.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	4.0E-51	[1..234]	[1..234]
gi\|42780993, gi\|... - gi\|42780993\|ref\|NP_978240.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	9.0E-51	[1..234]	[1..234]
gi\|51977045, gi\|... - gi\|52143576\|ref\|YP_083253.1\| polysaccharide deacetylase; chitooligosaccharide deacetylase [Bacillus ...	1.0E-50	[1..234]	[1..234]
gi\|228656315, gi... - gi\|229127199\|ref\|ZP_04256196.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-Cer4], gi\|228656315... gi\|229043634, gi... - gi\|229043634\|ref\|ZP_04191341.1\| Polysaccharide deacetylase [Bacillus cereus AH676], gi\|228725709\|gb\|... gi\|29895457, gi\|... - gi\|30019912\|ref\|NP_831543.1\| chitooligosaccharide deacetylase [Bacillus cereus ATCC 14579], gi\|29895...	1.0E-50	[1..234]	[1..234]
gi\|75760943, gi\|... - gi\|75760943\|ref\|ZP_00740952.1\| Chitooligosaccharide deacetylase [Bacillus thuringiensis serovar isra... gi\|218543742, gi... - gi\|218896810\|ref\|YP_002445221.1\| putative polysaccharide deacetylase [Bacillus cereus G9842], gi\|218... gi\|228859197, gi... - gi\|228900457\|ref\|ZP_04064684.1\| Polysaccharide deacetylase [Bacillus thuringiensis IBL 4222], gi\|228...	2.0E-50	[1..234]	[1..234]
gi\|118477300, gi... - gi\|118477300\|ref\|YP_894451.1\| polysaccharide deacetylase, chitooligosaccharide deacetylase [Bacillus... gi\|228599361, gi... - gi\|229184072\|ref\|ZP_04311283.1\| Polysaccharide deacetylase [Bacillus cereus BGSC 6E1], gi\|228599361\|... gi\|228661895, gi... - gi\|229121431\|ref\|ZP_04250658.1\| Polysaccharide deacetylase [Bacillus cereus 95/8201], gi\|228661895\|g... gi\|228933164, gi... - gi\|228933164\|ref\|ZP_04096021.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar andalousi... gi\|196024155, gi... - gi\|196045153\|ref\|ZP_03112386.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB108], gi\|19... gi\|196041182, gi... - gi\|196041182\|ref\|ZP_03108477.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi... gi\|49481111, gi\|... - gi\|49481111\|ref\|YP_036015.1\| polysaccharide deacetylase; chitooligosaccharide deacetylase [Bacillus ... gi\|225863741, gi... - gi\|225863741\|ref\|YP_002749119.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB102], gi\|2...	2.0E-50	[1..234]	[1..234]
gi\|65320893 - gi\|65320893\|ref\|ZP_00393852.1\| COG0726: Predicted xylanase/chitin deacetylase [Bacillus anthracis st... gi\|196044452, gi... - gi\|196044452\|ref\|ZP_03111687.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB108], gi\|19... gi\|218904745, gi... - gi\|218904745\|ref\|YP_002452579.1\| putative polysaccharide deacetylase [Bacillus cereus AH820], gi\|218... gi\|167511446, gi... - gi\|167640578\|ref\|ZP_02398840.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0193],... gi\|170688401, gi... - gi\|170688401\|ref\|ZP_02879609.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0465],... gi\|164713256, gi... - gi\|165871045\|ref\|ZP_02215696.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0488],... gi\|167636454, gi... - gi\|167636454\|ref\|ZP_02394752.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0442],... gi\|196034160, gi... - gi\|196034160\|ref\|ZP_03101570.1\| putative polysaccharide deacetylase [Bacillus cereus W], gi\|19599323... gi\|227813551, gi... - gi\|227813551\|ref\|YP_002813560.1\| putative polysaccharide deacetylase [Bacillus anthracis str. CDC 68... gi\|196038466, gi... - gi\|196038466\|ref\|ZP_03105775.1\| putative polysaccharide deacetylase [Bacillus cereus NVH0597-99], gi... gi\|225865599, gi... - gi\|225865599\|ref\|YP_002750977.1\| putative polysaccharide deacetylase [Bacillus cereus 03BB102], gi\|2... gi\|118478856, gi... - gi\|118478856\|ref\|YP_896007.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensis ... gi\|170708164, gi... - gi\|170708164\|ref\|ZP_02898611.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0389],... gi\|228830986, gi... - gi\|228928667\|ref\|ZP_04091703.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pondicher... gi\|172082094, gi... - gi\|177652420\|ref\|ZP_02934887.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0174],... gi\|228843443, gi... - gi\|228916245\|ref\|ZP_04079815.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar pulsiensi... gi\|228812478, gi... - gi\|228947231\|ref\|ZP_04109525.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar monterrey... gi\|228934888, gi... - gi\|228934888\|ref\|ZP_04097719.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar andalousi... gi\|228597562, gi... - gi\|229185850\|ref\|ZP_04313023.1\| Polysaccharide deacetylase [Bacillus cereus BGSC 6E1], gi\|228597562\|... gi\|229092587, gi... - gi\|229092587\|ref\|ZP_04223738.1\| Polysaccharide deacetylase [Bacillus cereus Rock3-42], gi\|228690740\|... gi\|229602746, gi... - gi\|229602746\|ref\|YP_002867809.1\| putative polysaccharide deacetylase [Bacillus anthracis str. A0248]...	3.0E-48	[1..230]	[2..237]
gi\|47567900, gi\|... - gi\|47567900\|ref\|ZP_00238607.1\| polysaccharide deacetylase, putative [Bacillus cereus G9241], gi\|4755...	4.0E-48	[2..230]	[18..252]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKIIITIV TLFIITVALF GTYKLMNARG FQLFGDLTNR VETNEKVVAL TFDDGPTNNV  60
   61 KQILPLLDTY HAKATFFLIG NELEKNLSLG EAIVQSGHQV GNHTYSHNRM VFKTPSYIKE 120
  121 EIEKTNSLIR RIGFTGEIDF RPPNGKKLIG LPYYLNKNNI ETITWDLEPD TFYKSAADKI 180
  181 DYVSKNVKPG SIILLHSMYD ESNENLQTIE GILDSLSKKG YQFVTVNELQ KSAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: