YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49178628, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	480 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49178628, gi|....

Description	E-value	Query Range	Subject Range
gi\|33151586, gi\|... - gi\|33151586\|ref\|NP_872939.1\| carbon starvation protein A [Haemophilus ducreyi 35000HP], gi\|33147806\|...	0.0	[1..471]	[1..523]
gi\|15601997, gi\|... - gi\|15601997\|ref\|NP_245069.1\| hypothetical protein PM0132 [Pasteurella multocida subsp. multocida str...	0.0	[1..477]	[1..514]
gi\|36783682, gi\|... - gi\|37524259\|ref\|NP_927603.1\| hypothetical protein plu0240 [Photorhabdus luminescens subsp. laumondii...	0.0	[1..464]	[1..471]
gi\|54310147, gi\|... - gi\|54310147\|ref\|YP_131167.1\| putative carbon starvation protein A [Photobacterium profundum SS9], gi...	0.0	[1..474]	[17..501]
gi\|86148422, gi\|... - gi\|86148422\|ref\|ZP_01066713.1\| Carbon starvation protein, predicted membrane protein [Vibrio sp. MED...	0.0	[1..479]	[1..490]
gi\|28805523, gi\|... - gi\|28897314\|ref\|NP_796919.1\| putative carbon starvation protein A [Vibrio parahaemolyticus RIMD 2210... gi\|28805523 - gi\|28805523\|dbj\|BAC58803.1\| putative carbon starvation protein A [Vibrio parahaemolyticus RIMD 22106...	0.0	[1..474]	[1..485]
gi\|90414893, gi\|... - gi\|90414893\|ref\|ZP_01222858.1\| putative carbon starvation protein A [Photobacterium profundum 3TCK],...	0.0	[1..474]	[1..485]
gi\|227117062, gi... - gi\|75826046\|ref\|ZP_00755481.1\| COG1966: Carbon starvation protein, predicted membrane protein [Vibri...	0.0	[1..474]	[1..485]
gi\|9655126, gi\|1... - gi\|9655126\|gb\|AAF93852.1\| carbon starvation protein A, putative [Vibrio cholerae O1 biovar El Tor st... gi\|11355858 - pir\|\|A82294 probable carbon starvation protein A VC0687 [imported] - Vibrio cholerae (strain N16961 ... gi\|121587779, gi... - gi\|121587779\|ref\|ZP_01677539.1\| carbon starvation protein A, putative [Vibrio cholerae 2740-80], gi\|... gi\|153215110, gi... - gi\|153215110\|ref\|ZP_01949817.1\| carbon starvation protein A, putative [Vibrio cholerae 1587], gi\|124... gi\|153818704, gi... - gi\|153818704\|ref\|ZP_01971371.1\| carbon starvation protein A, putative [Vibrio cholerae NCTC 8457], g... gi\|227080868, gi... - gi\|227080868\|ref\|YP_002809419.1\| putative carbon starvation protein A [Vibrio cholerae M66-2], gi\|22... gi\|229505693, gi... - gi\|229505693\|ref\|ZP_04395203.1\| carbon starvation protein A [Vibrio cholerae BX 330286], gi\|22935791... gi\|229508733, gi... - gi\|229508733\|ref\|ZP_04398226.1\| carbon starvation protein A [Vibrio cholerae B33], gi\|229354257\|gb\|E... gi\|229512423, gi... - gi\|229512423\|ref\|ZP_04401897.1\| carbon starvation protein A [Vibrio cholerae TMA 21], gi\|229350573\|g... gi\|229344206, gi... - gi\|229519517\|ref\|ZP_04408960.1\| carbon starvation protein A [Vibrio cholerae RC9], gi\|229344206\|gb\|E... gi\|229519960, gi... - gi\|229519960\|ref\|ZP_04409390.1\| carbon starvation protein A [Vibrio cholerae TM 11079-80], gi\|229343... gi\|229608712, gi... - gi\|229608712\|ref\|YP_002879360.1\| carbon starvation protein A [Vibrio cholerae MJ-1236], gi\|229371367... gi\|254851018, gi... - gi\|75829540\|ref\|ZP_00758839.1\| COG1966: Carbon starvation protein, predicted membrane protein [Vibri... gi\|254291964, gi... - gi\|254291964\|ref\|ZP_04962744.1\| carbon starvation protein A, putative [Vibrio cholerae AM-19226], gi... gi\|148875155, gi... - gi\|153829372\|ref\|ZP_01982039.1\| putative carbon starvation protein A [Vibrio cholerae 623-39], gi\|14... gi\|153826776, gi... - gi\|153826776\|ref\|ZP_01979443.1\| carbon starvation protein A, putative [Vibrio cholerae MZO-2], gi\|14...	0.0	[1..474]	[1..485]
gi\|46129016 - gi\|46129016\|ref\|ZP_00155610.2\| COG1966: Carbon starvation protein, predicted membrane protein [Haemo...	0.0	[1..472]	[1..527]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITFLVSIVV LIIGYFTYGK FIEKIFGVNY KRKTPAYVNQ DGVDYVPMDR RKNSMIQLLN  60
   61 IAGTGPIFGP ILGALYGPIA FVWIVIGA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFAGAVHDYL TGMISIRNKG AHIPELAGKF LGNAMRHIVN VFSLLLLVLV GTVFITTPAS  60
   61 LLDIVLQGKV SITIILSVIF VYYILSTILP IDKIIGKIYP VLGALLLISA IGIGGMMIIK 120
  121 GSPIPELTFE NMHPDNAPIF PLLMLTITCG ALSGFHATQS PIISRTLQTE KHGRYVFFGM 180
  181 MVAEAIIAMI WAAAAMSIFS YGELNELIKS GTPAAVVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [307-388]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EISKTMLGAV GGTIAVIGVI VLPITSGDTA FRAARSIIAD YFNFEQTKLK NRLMIAIPLF  60
   61 VIAYGLTKID FTILWRYFSW AN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [389-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSTAAIALWI GTMYLFIKGK PYVVSLIPAI FMTLMTVIYI LNAKIGFNIP LNTSYIIGAV  60
   61 ITVILTAIFF MKAMKNKNEN IEVDVQLEKE AV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits