YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261844, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261844, gi|....

Description	E-value	Query Range	Subject Range
gi\|106893314, gi... - gi\|158319290\|ref\|YP_001511797.1\| phospholipase D/transphosphatidylase [Alkaliphilus oremlandii OhILA...	3.0E-85	[26..405]	[94..479]
gi\|153184921, gi... - gi\|254900359\|ref\|ZP_05260283.1\| cardiolipin synthase [Listeria monocytogenes J0161], gi\|153184921\|re... CLS_LISMC - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=cls PE=3 SV=1 gi\|254831074, gi... - gi\|254831074\|ref\|ZP_05235729.1\| cardiolipin synthase [Listeria monocytogenes 10403S], gi\|153197191\|r... gi\|254825375 - gi\|254825375\|ref\|ZP_05230376.1\| cardiolipin synthase [Listeria monocytogenes FSL J1-194] gi\|127764490, gi... - gi\|254913402\|ref\|ZP_05263414.1\| cardiolipin synthase [Listeria monocytogenes J2818], gi\|153192162\|re... gi\|254853969 - gi\|254853969\|ref\|ZP_05243317.1\| cardiolipin synthase [Listeria monocytogenes FSL R2-503] gi\|153168611, gi... - gi\|153168611\|ref\|ZP_01928434.1\| cardiolipin synthetase [Listeria monocytogenes FSL N1-017], gi\|13372... gi\|254879171 - gi\|254879171\|ref\|ZP_05251881.1\| cardiolipin synthase [Listeria monocytogenes FSL J2-071] gi\|133729180, gi... - gi\|254828078\|ref\|ZP_05232765.1\| cardiolipin synthase [Listeria monocytogenes FSL N3-165], gi\|1531757... gi\|255025951 - gi\|255025951\|ref\|ZP_05297937.1\| cardiolipin synthase [Listeria monocytogenes FSL J2-003] CLS_LISMO - Cardiolipin synthase OS=Listeria monocytogenes GN=cls PE=3 SV=1 gi\|153180597, gi... - gi\|254937783\|ref\|ZP_05269480.1\| cardiolipin synthase [Listeria monocytogenes F6900], gi\|153180597\|re... gi\|255520611 - gi\|255520611\|ref\|ZP_05387848.1\| cardiolipin synthase [Listeria monocytogenes FSL J1-175] gi\|254932256, gi... - gi\|254932256\|ref\|ZP_05265615.1\| cardiolipin synthase [Listeria monocytogenes HPB2262], gi\|153204089\|... gi\|224499858 - gi\|224499858\|ref\|ZP_03668207.1\| cardiolipin synthetase [Listeria monocytogenes Finland 1988] CLS_LISMC - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=cls PE=3 SV=1 CLS_LISMF - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=cls PE=3 SV=1 gi\|224503256 - gi\|224503256\|ref\|ZP_03671563.1\| cardiolipin synthetase [Listeria monocytogenes FSL R2-561] CLS_LISMO - Cardiolipin synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=cls PE=... gi\|47015557, gi\|... - gi\|47096096\|ref\|ZP_00233697.1\| cardiolipin synthetase [Listeria monocytogenes str. 1/2a F6854], gi\|4... gi\|47092789, gi\|... - gi\|47092789\|ref\|ZP_00230574.1\| cardiolipin synthetase [Listeria monocytogenes str. 4b H7858], gi\|470...	8.0E-84	[34..405]	[103..482]
gi\|68446672, gi\|... - gi\|70725948\|ref\|YP_252862.1\| hypothetical protein SH0947 [Staphylococcus haemolyticus JCSC1435], gi\|...	1.0E-83	[26..405]	[107..494]
gi\|77637482, gi\|... - gi\|77686720\|ref\|ZP_00802050.1\| Phospholipase D/Transphosphatidylase [Alkaliphilus metalliredigenes Q...	1.0E-83	[26..405]	[94..479]
CLS_LISIN - Cardiolipin synthase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=cls PE=3 SV=1 CLS_LISIN - Cardiolipin synthase OS=Listeria innocua GN=cls PE=3 SV=1	2.0E-83	[34..405]	[103..482]
CLS_GEOKA - Cardiolipin synthase OS=Geobacillus kaustophilus GN=cls PE=3 SV=1 CLS_GEOKA - Cardiolipin synthase OS=Geobacillus kaustophilus (strain HTA426) GN=cls PE=3 SV=1	8.0E-83	[24..405]	[113..502]
gi\|56963585, gi\|... - gi\|56963585\|ref\|YP_175316.1\| cardiolipin synthetase [Bacillus clausii KSM-K16], gi\|56909828\|dbj\|BAD6...	1.0E-82	[33..405]	[108..488]
CLS_STAAS - Cardiolipin synthase OS=Staphylococcus aureus (strain MSSA476) GN=cls PE=3 SV=1 CLS2_STAAC - Cardiolipin synthase 2 OS=Staphylococcus aureus (strain COL) GN=cls2 PE=3 SV=1 CLS_STAAM - Cardiolipin synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cls PE=3 SV=1 gi\|25320530 - pir\|\|F90001 hypothetical protein SA1891 [imported] - Staphylococcus aureus (strain N315) gi\|147741609, gi... - gi\|90587160\|ref\|ZP_01242830.1\| Phospholipase D/Transphosphatidylase [Staphylococcus aureus subsp. au... gi\|88195989, gi\|... - gi\|88195989\|ref\|YP_500802.1\| cardiolipin synthetase, putative [Staphylococcus aureus subsp. aureus N... gi\|150394604, gi... - gi\|90584448\|ref\|ZP_01240177.1\| Phospholipase D/Transphosphatidylase [Staphylococcus aureus subsp. au... gi\|221137297 - gi\|221137297\|ref\|ZP_03562106.1\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus str. JKD... gi\|255006877 - gi\|255006877\|ref\|ZP_05145478.2\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus Mu50-ome... gi\|161510300, gi... - gi\|161510300\|ref\|YP_001575959.1\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus USA300_... gi\|221141609 - gi\|221141609\|ref\|ZP_03566102.1\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus str. JKD... CLS_STAAW - Cardiolipin synthase OS=Staphylococcus aureus (strain MW2) GN=cls PE=3 SV=1 CLS_STAAN - Cardiolipin synthase OS=Staphylococcus aureus (strain N315) GN=cls PE=1 SV=1 gi\|156722539, gi... - gi\|156980404\|ref\|YP_001442663.1\| hypothetical protein SAHV_2073 [Staphylococcus aureus subsp. aureus... gi\|150375004, gi... - gi\|151222204\|ref\|YP_001333026.1\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus str. Ne...	1.0E-82	[26..405]	[107..494]
gi\|227244833, gi... - gi\|227558828\|ref\|ZP_03988875.1\| cardiolipin synthetase [Staphylococcus aureus subsp. aureus MN8], gi... CLS2_STAAR - Cardiolipin synthase 2 OS=Staphylococcus aureus (strain MRSA252) GN=cls2 PE=3 SV=1	1.0E-82	[26..405]	[107..494]
gi\|82751690, gi\|... - gi\|82751690\|ref\|YP_417431.1\| cardiolipin synthetase [Staphylococcus aureus RF122], gi\|82657221\|emb\|C...	2.0E-82	[26..405]	[107..494]

Back

Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMIKKILRV TSIIIAIFAF ILICMHIDVT LGRKMEAGKN MPTEYAPHYS DFQLYVEGKS  60
   61 FYKQLFTDIK EAKQSIYTYF FILSDDKSSH TFLNLLKEKA KEGVNVYLSV DLLNDLSFER 120
  121 KMKKELQENG VHFTYSRKQE LPFGFYSLHH RNHRRITTID GEIGYTGGFN IGDEYLGKDK 180
  181 HFGYWRDYHV RIKGEGAKDL EEQFALDWKR DTKEDIKRST DKASKGNTLH TMVSYNGHHV 240
  241 AEKYIDLIKQ ARHSIVIATP YFIAKNKESM NALIAAQKRG VTVKILWSYK PDLPLIKEAA 300
  301 YPYIRQAINN GITVYGYKKG MFHGKLMLID NELTVIGTTN FTSRSFNIND EMNFYIHGGP 360
  361 IVGQVNKALT EDFRDSKEMT KEFFEKLSFW ERCKEKFAGM VDFYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.30103
Match:	1xdoA
Description:	Crystal Structure of Escherichia coli Polyphosphate Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoric diester hydrolase activity	1.55477881010087	bayes_pls_golite062009
catalytic activity	1.29236214516383	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.486367378916393	bayes_pls_golite062009
binding	0.069683180714824	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: