YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49184606, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49184606, gi|....

Description	E-value	Query Range	Subject Range
gi\|15025140, gi\|... - gi\|15895417\|ref\|NP_348766.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acet... gi\|25500687 - pir\|\|G97164 fusion of flagellar biosynthesis proteins FliR and FlhB [imported] - Clostridium acetobu...	3.0E-48	[1..249]	[1..252]
gi\|33601553, gi\|... - gi\|33601553\|ref\|NP_889113.1\| flagellar biosynthetic protein [Bordetella bronchiseptica RB50], gi\|335...	3.0E-45	[5..253]	[12..262]
gi\|33592490, gi\|... - gi\|33592490\|ref\|NP_880134.1\| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I], gi...	4.0E-45	[5..253]	[12..262]
gi\|73539699, gi\|... - gi\|73539699\|ref\|YP_300066.1\| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134], gi\|721...	2.0E-44	[5..251]	[12..260]
gi\|90411035, gi\|... - gi\|90411035\|ref\|ZP_01219049.1\| flagellar biosynthesis protein [Photobacterium profundum 3TCK], gi\|90...	3.0E-42	[3..246]	[9..255]
gi\|46912553, gi\|... - gi\|54308127\|ref\|YP_129147.1\| flagellar biosynthesis protein FliR [Photobacterium profundum SS9], gi\|...	7.0E-42	[3..246]	[9..255]
gi\|70729045, gi\|... - gi\|70729045\|ref\|YP_258779.1\| flagellar biosynthesis protein FliR [Pseudomonas fluorescens Pf-5], gi\|...	6.0E-41	[4..246]	[8..251]
gi\|67875428, gi\|... - gi\|67875428\|ref\|ZP_00504768.1\| Flagellar biosynthesis protein FliR [Clostridium thermocellum ATCC 27...	8.0E-41	[6..253]	[12..261]
gi\|23471930, gi\|... - gi\|66046671\|ref\|YP_236512.1\| flagellar biosynthesis protein FliR [Pseudomonas syringae pv. syringae ...	9.0E-41	[4..246]	[14..257]
gi\|48770095, gi\|... - gi\|94314222\|ref\|YP_587431.1\| flagellar biosynthetic protein FliR [Ralstonia metallidurans CH34], gi\|...	1.0E-40	[5..251]	[12..260]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMELWAATF FAFCRITSFL YFLPFFSGRS IPAMAKVTFG LALSITVADQ VDVSHIKTVW  60
   61 DVAAYAGTQI VIGLSLSKIV EMLWNIPKMA GHILDFDIGL SQASLFDVNA GSQSTLLSTI 120
  121 FDIFFLIIFI SLGGINYFVA TILKSFQYTE AISKLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTSFLDSLLA TLLFAITSAV EIALPLMGSL FIINFVLILI AKNAPQLNVF MNAYVIKITC  60
   61 GILFIAMSVP MLGYVFKNMT DVLLEEYTKL FNFFLTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits