YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255937, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255937, gi|....

Description	E-value	Query Range	Subject Range
gi\|118791508, gi... - gi\|118791508\|ref\|XP_552951.2\| AGAP009036-PA [Anopheles gambiae str. PEST], gi\|116117635\|gb\|EAL39028.... AGAP009036-PA - solute carrier family 9 (sodium/hydrogen exchanger), member 3\|protein_coding\|3R:24426421:24457340:1\|...	3.0E-61	[7..387]	[248..661]
gi\|37727744 - gi\|37727744\|gb\|AAO34131.1\| alkali metal ion/proton exchanger 3 [Anopheles gambiae]	3.0E-60	[7..387]	[248..660]
gi\|32450774 - gi\|32450774\|gb\|AAM63432.1\| Na+/H+ exchanger [Aedes aegypti]	5.0E-60	[7..387]	[252..665]
Nhe2-PB, Nhe2-PA - The gene Na<sup>+</sup>/H<sup>+</sup> hydrogen exchanger 2 is referred to in FlyBase by the symbol D...	8.0E-59	[7..387]	[197..612]
gi\|125987481, gi... - gi\|54645835\|gb\|EAL34573.1\| GA21648-PA [Drosophila pseudoobscura], gi\|125987481\|ref\|XP_001357503.1\| G...	2.0E-57	[7..387]	[194..609]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEFFFQIA LILLSTKLAG DLSVRLGQPS VLGKLIVGIV IGPAVLGWIE NSELLTQLSN  60
   61 VGVILLMFMA GLETDLEELN ANRNSSLAVA LGGIILPFVG GYVSGLVMGM EQGNAVFLGL 120
  121 LLCATSVSIS VQTLRDLGKM KTRESTTMLG AAVFDDILVV ILLAFAMSFL GTDDVNLTMV 180
  181 ILKKVVFFAS IILIGWKGVP AIMRWLSPLR VSESIVSAAL IICFSFAYFG ELLGIAGIIG 240
  241 AFAAGIAISQ TNYKHEVEKK VEPIAYAMFV PVFFVSIGMN ITFDGIGDQI GFILALTVIA 300
  301 VLTKLIGCGV GARMTGFDAK SSAIIGSGMV SRGEVALIIA GTGLSSGLLA QDYFTAIVIV 360
  361 VILTTMITPP MLKYTFGAKD KAMKASK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1zcdA
Description:	Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits