YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255908, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255908, gi|....

Description	E-value	Query Range	Subject Range
gi\|30023310, gi\|... - gi\|30023310\|ref\|NP_834941.1\| chain length regulator (capsular polysaccharide biosynthesis) [Bacillus... gi\|228630044, gi... - gi\|229153440\|ref\|ZP_04281618.1\| Capsular polysaccharide biosynthesis [Bacillus cereus m1550], gi\|228...	1.0E-56	[1..245]	[1..245]
gi\|49478948, gi\|... - gi\|49478948\|ref\|YP_039268.1\| chain length regulator (capsular polysaccharide biosynthesis) [Bacillus...	2.0E-56	[1..245]	[1..245]
gi\|228854161, gi... - gi\|228905469\|ref\|ZP_04069422.1\| Capsular polysaccharide biosynthesis [Bacillus thuringiensis IBL 422... gi\|74492017, gi\|... - gi\|75760486\|ref\|ZP_00740524.1\| Chain length regulator (capsular polysaccharide biosynthesis) [Bacill...	6.0E-56	[1..245]	[5..249]
gi\|42784444, gi\|... - gi\|42784444\|ref\|NP_981691.1\| chain length determinant protein [Bacillus cereus ATCC 10987], gi\|42740...	6.0E-56	[1..245]	[1..245]
gi\|89155441, gi\|... - gi\|89206674\|ref\|ZP_01185229.1\| Lipopolysaccharide biosynthesis [Bacillus weihenstephanensis KBAB4], ...	2.0E-54	[1..245]	[1..245]
gi\|56381704, gi\|... - gi\|56421862\|ref\|YP_149180.1\| capsular polysaccharide biosynthesis protein [Geobacillus kaustophilus ...	3.0E-54	[1..245]	[1..245]
gi\|15616231, gi\|... - gi\|15616231\|ref\|NP_244536.1\| capsular polysaccharide biosynthesis [Bacillus halodurans C-125], gi\|10... gi\|25328855 - pir\|\|E84108 capsular polysaccharide biosynthesis BH3669 [imported] - Bacillus halodurans (strain C-1...	1.0E-51	[1..230]	[1..229]
gi\|24637423 - gi\|24637423\|gb\|AAN63699.1\|AF454496_4 Eps5C [Streptococcus thermophilus]	2.0E-51	[3..225]	[9..229]
gi\|22218117 - gi\|22218117\|gb\|AAM94569.1\| wzd [Streptococcus thermophilus] gi\|55739022 - gb\|AAV62663.1\| exopolysaccharide biosynthesis protein [Streptococcus thermophilus CNRZ1066] gi\|55739022, gi\|... - gi\|55823037\|ref\|YP_141478.1\| exopolysaccharide biosynthesis protein [Streptococcus thermophilus CNRZ...	2.0E-51	[3..225]	[9..229]
gi\|55737107, gi\|... - gi\|55821122\|ref\|YP_139564.1\| exopolysaccharide exporter accessory protein [Streptococcus thermophilu... gi\|55737107 - gb\|AAV60749.1\| exopolysaccharide exporter accessory protein [Streptococcus thermophilus LMG 18311]	3.0E-51	[3..225]	[9..229]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQEISMKDF QQLLKRRIVT IILTMCCLTV SLILISMYVL KPSYQYSTQI LVGNLDEFNK  60
   61 ENSTNKTQEN KQLVTSYVDI LKSPLIISTV KKTLKLEQSS HELVQKISVV NMDNSQIVTV 120
  121 TAKDSDPIIV KEIVKSLAEQ SQKSFQQYTN VQGVKILTDP EL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.39794
Match:	PF02706.6
Description:	No description for PF02706.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.945	N/A	N/A	d.110.4	SNARE-like

Predicted Domain #2

Region A:
Residues: [163-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEKAEKLFPK FQLIIPISVI VSFFVGIGLA VFRDYFDERI YVEQDLEKIT TVPVIGHINM  60
   61 EPKRKKESTE VDPQSAIYRG EHVDV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits