YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255870, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255870, gi|....

Description	E-value	Query Range	Subject Range
gi\|163861659, gi... - gi\|89204917\|ref\|ZP_01183492.1\| DnaD and phage-associated region [Bacillus weihenstephanensis KBAB4],...	3.0E-69	[1..235]	[1..235]
gi\|74492107, gi\|... - gi\|75760396\|ref\|ZP_00740440.1\| DNA replication protein dnaD [Bacillus thuringiensis serovar israelen...	3.0E-68	[1..235]	[3..237]
gi\|30019694, gi\|... - gi\|30019694\|ref\|NP_831325.1\| DNA replication protein dnaD [Bacillus cereus ATCC 14579], gi\|29895238\|... gi\|229189727, gi... - gi\|229189727\|ref\|ZP_04316741.1\| DNA replication protein dnaD [Bacillus cereus ATCC 10876], gi\|228593... gi\|229144244, gi... - gi\|229144244\|ref\|ZP_04272658.1\| DNA replication protein dnaD [Bacillus cereus BDRD-ST24], gi\|2286392... gi\|228656559, gi... - gi\|229126959\|ref\|ZP_04255970.1\| DNA replication protein dnaD [Bacillus cereus BDRD-Cer4], gi\|2286565... gi\|228704510, gi... - gi\|229078828\|ref\|ZP_04211381.1\| DNA replication protein dnaD [Bacillus cereus Rock4-2], gi\|228704510... gi\|229069198, gi... - gi\|229069198\|ref\|ZP_04202489.1\| DNA replication protein dnaD [Bacillus cereus F65185], gi\|228713950\|... gi\|229043391, gi... - gi\|229043391\|ref\|ZP_04191108.1\| DNA replication protein dnaD [Bacillus cereus AH676], gi\|228725972\|g... gi\|228957921, gi... - gi\|228957921\|ref\|ZP_04119661.1\| DNA replication protein dnaD [Bacillus thuringiensis serovar pakista... gi\|228807557, gi... - gi\|228952025\|ref\|ZP_04114120.1\| DNA replication protein dnaD [Bacillus thuringiensis serovar kurstak...	3.0E-68	[1..235]	[2..236]
gi\|152023821, gi... - gi\|89201005\|ref\|ZP_01179753.1\| DnaD and phage-associated region [Bacillus cereus subsp. cytotoxis NV...	1.0E-67	[1..235]	[1..235]
gi\|254683133 - gi\|254683133\|ref\|ZP_05146994.1\| DNA replication protein DnaD [Bacillus anthracis str. CNEVA-9066] gi\|227815607, gi... - gi\|227815607\|ref\|YP_002815616.1\| DNA replication protein DnaD [Bacillus anthracis str. CDC 684], gi\|... gi\|254734482 - gi\|254734482\|ref\|ZP_05192194.1\| DNA replication protein DnaD [Bacillus anthracis str. Western North ... gi\|254723721 - gi\|254723721\|ref\|ZP_05185507.1\| DNA replication protein DnaD [Bacillus anthracis str. A1055] gi\|254755132 - gi\|254755132\|ref\|ZP_05207166.1\| DNA replication protein DnaD [Bacillus anthracis str. Vollum] gi\|254740893 - gi\|254740893\|ref\|ZP_05198581.1\| DNA replication protein DnaD [Bacillus anthracis str. Kruger B] gi\|254759669 - gi\|254759669\|ref\|ZP_05211693.1\| DNA replication protein DnaD [Bacillus anthracis str. Australia 94] gi\|196046662, gi... - gi\|196046662\|ref\|ZP_03113886.1\| DNA replication protein DnaD [Bacillus cereus 03BB108], gi\|196022595... gi\|218902757, gi... - gi\|218902757\|ref\|YP_002450591.1\| DNA replication protein DnaD [Bacillus cereus AH820], gi\|218534919\|... gi\|196033377, gi... - gi\|196033377\|ref\|ZP_03100789.1\| DNA replication protein DnaD [Bacillus cereus W], gi\|195993811\|gb\|ED... gi\|196030231, gi... - gi\|196039086\|ref\|ZP_03106393.1\| DNA replication protein DnaD [Bacillus cereus NVH0597-99], gi\|196030... gi\|165869353, gi... - gi\|165869353\|ref\|ZP_02214012.1\| DNA replication protein DnaD [Bacillus anthracis str. A0488], gi\|164... gi\|167633335, gi... - gi\|167633335\|ref\|ZP_02391660.1\| DNA replication protein DnaD [Bacillus anthracis str. A0442], gi\|167... gi\|172083493, gi... - gi\|177650349\|ref\|ZP_02933316.1\| DNA replication protein DnaD [Bacillus anthracis str. A0174], gi\|172... gi\|190560201, gi... - gi\|190568601\|ref\|ZP_03021506.1\| DNA replication protein DnaD [Bacillus anthracis Tsiankovskii-I], gi... gi\|167639156, gi... - gi\|167639156\|ref\|ZP_02397429.1\| DNA replication protein DnaD [Bacillus anthracis str. A0193], gi\|167... gi\|170669773, gi... - gi\|170686076\|ref\|ZP_02877298.1\| DNA replication protein DnaD [Bacillus anthracis str. A0465], gi\|170... gi\|52143803, gi\|... - gi\|52143803\|ref\|YP_083025.1\| DNA replication protein [Bacillus cereus E33L], gi\|51977272\|gb\|AAU18822... gi\|47566010, gi\|... - gi\|47566010\|ref\|ZP_00237048.1\| DNA replication-like protein [Bacillus cereus G9241], gi\|47556927\|gb\|... gi\|225863509, gi... - gi\|225863509\|ref\|YP_002748887.1\| DNA replication protein DnaD [Bacillus cereus 03BB102], gi\|22578749... gi\|49480994, gi\|... - gi\|49480994\|ref\|YP_035761.1\| DNA replication protein [Bacillus thuringiensis serovar konkukian str. ...	3.0E-66	[1..235]	[1..235]
gi\|222095275, gi... - gi\|222095275\|ref\|YP_002529335.1\| DNA replication protein DnaD [Bacillus cereus Q1], gi\|221239333\|gb\|... gi\|42780749, gi\|... - gi\|42780749\|ref\|NP_977996.1\| DNA replication protein DnaD [Bacillus cereus ATCC 10987], gi\|42736669\|... gi\|217959127, gi... - gi\|217959127\|ref\|YP_002337675.1\| DNA replication protein DnaD [Bacillus cereus AH187], gi\|217067087\|... gi\|206974858, gi... - gi\|206974858\|ref\|ZP_03235773.1\| DNA replication protein DnaD [Bacillus cereus H3081.97], gi\|20674687...	4.0E-66	[1..235]	[1..235]
gi\|25359763 - pir\|\|A83862 initiation of chromosome replication dnaD [imported] - Bacillus halodurans (strain C-125... gi\|10174314, gi\|... - gi\|15614260\|ref\|NP_242563.1\| initiation of chromosome replication [Bacillus halodurans C-125], gi\|10...	2.0E-61	[1..235]	[1..233]
gi\|16803934 - gi\|16803934\|ref\|NP_465419.1\| hypothetical protein lmo1895 [Listeria monocytogenes EGD-e] gi\|25359766, gi\|... - pir\|\|AG1311 chromosome replication initiation protein homolog dnaD [imported] - Listeria monocytogen... gi\|224500247 - gi\|224500247\|ref\|ZP_03668596.1\| hypothetical protein LmonF1_11429 [Listeria monocytogenes Finland 19... gi\|254831504, gi... - gi\|254831504\|ref\|ZP_05236159.1\| hypothetical protein Lmon1_09123 [Listeria monocytogenes 10403S], gi... gi\|153175123, gi... - gi\|254827220\|ref\|ZP_05231907.1\| hypothetical protein LmonocytogeFSL_02070 [Listeria monocytogenes FS... gi\|224501305 - gi\|224501305\|ref\|ZP_03669612.1\| hypothetical protein LmonFR_02080 [Listeria monocytogenes FSL R2-561...	3.0E-59	[1..235]	[1..236]
gi\|127765177, gi... - gi\|254912453\|ref\|ZP_05262465.1\| hypothetical protein LmonJ2_06631 [Listeria monocytogenes J2818], gi... gi\|126943673, gi... - gi\|254899408\|ref\|ZP_05259332.1\| hypothetical protein LmonJ_06329 [Listeria monocytogenes J0161], gi\|... gi\|153179956, gi... - gi\|254936780\|ref\|ZP_05268477.1\| hypothetical protein LmonF6_06621 [Listeria monocytogenes F6900], gi... gi\|47096478, gi\|... - gi\|47096478\|ref\|ZP_00234070.1\| DNA replication protein DnaD [Listeria monocytogenes str. 1/2a F6854]...	4.0E-59	[1..235]	[1..236]
gi\|16801075 - gi\|16801075\|ref\|NP_471343.1\| hypothetical protein lin2009 [Listeria innocua Clip11262] gi\|25359767, gi\|... - pir\|\|AG1683 chromosome replication initiation protein homolog dnaD [imported] - Listeria innocua (st...	4.0E-56	[1..235]	[1..236]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKMMLQWF EQGSIAIPKL LMMHYKKLGL NETEFMVVLH VHTFLESGNS FPTPSEISER  60
   61 MTITEMKCME VIQTLIQKGF LSLEGGQKSE AMMCESYSLQ PLWEKILHFL MNESIEEEQK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.38
Match:	2frhA
Description:	Crystal Structure of Sara, A Transcription Regulator From Staphylococcus Aureus
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIKQLQVNLY TVFEKEFGRP LSPFECETLG MWEDQDQHHP NLIQAALREA VMSGKLNFRY  60
   61 IDRILFEWKK NGIKTVDQAQ NQGRKFRANQ QRTQQTTKQE TKFTGKVPLY NWLEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.045757
Match:	2i5uA
Description:	No description for 2i5uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits