YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261625, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261625, gi|....

Description	E-value	Query Range	Subject Range
gi\|65318894 - gi\|65318894\|ref\|ZP_00391853.1\| COG1573: Uracil-DNA glycosylase [Bacillus anthracis str. A2012] gi\|228845408, gi... - gi\|228914204\|ref\|ZP_04077820.1\| Uracil-DNA glycosylase superfamily [Bacillus thuringiensis serovar p...	9.0E-55	[1..213]	[4..216]
gi\|42736651, gi\|... - gi\|42780731\|ref\|NP_977978.1\| uracil-DNA glycosylase family protein [Bacillus cereus ATCC 10987], gi\|...	1.0E-54	[1..213]	[1..213]
gi\|75761444, gi\|... - gi\|75761444\|ref\|ZP_00741412.1\| Uracil DNA glycosylase superfamily protein [Bacillus thuringiensis se... gi\|218896558, gi... - gi\|218896558\|ref\|YP_002444969.1\| uracil-DNA glycosylase family protein [Bacillus cereus G9842], gi\|2... gi\|228859378, gi... - gi\|228900209\|ref\|ZP_04064440.1\| Uracil-DNA glycosylase superfamily [Bacillus thuringiensis IBL 4222]...	2.0E-54	[1..213]	[1..213]
gi\|51977287, gi\|... - gi\|52143818\|ref\|YP_083009.1\| uracil-DNA glycosylase family protein; DNA polymerase [Bacillus cereus ...	2.0E-54	[1..213]	[1..213]
gi\|30019677, gi\|... - gi\|30019677\|ref\|NP_831308.1\| DNA polymerase [Bacillus cereus ATCC 14579], gi\|29895221\|gb\|AAP08509.1\|...	3.0E-54	[1..213]	[1..213]
gi\|77919605, gi\|... - gi\|77919605\|ref\|YP_357420.1\| phage SpO1 DNA polymerase-related protein [Pelobacter carbinolicus DSM ...	3.0E-54	[3..211]	[43..220]
gi\|47565992, gi\|... - gi\|47565992\|ref\|ZP_00237030.1\| phage SPO1 DNA polymerase-related protein, putative [Bacillus cereus ...	8.0E-54	[1..213]	[1..213]
gi\|49332559, gi\|... - gi\|49481003\|ref\|YP_035745.1\| uracil-DNA glycosylase family protein; DNA polymerase [Bacillus thuring...	8.0E-54	[1..213]	[1..213]
gi\|221565894, gi... - gi\|222056605\|ref\|YP_002538967.1\| phage SPO1 DNA polymerase-related protein [Geobacter sp. FRC-32], g...	9.0E-54	[3..211]	[74..251]
gi\|85859396, gi\|... - gi\|85859396\|ref\|YP_461598.1\| uracil DNA glycosylase superfamily protein [Syntrophus aciditrophicus S...	1.0E-53	[3..211]	[82..260]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYPDHLVKQ VKERSAPYQL EGFLSGQGPE NPKFMLLGEA PGETEIHNGI PFSGRAGKQL  60
   61 MGFLERIHVT REEVYITSAV RSRPYKWREK KERSGSIIQK KYNRTPNQGE IVAHAPLLDY 120
  121 ELEKLNPKLI VTLGNIGLQR LTGKDKKITD VHGQLLKQPI QKLKDMQSAE FIWSEKEYHI 180
  181 FPTFHPASIF YNRSLLELIY EDLEKLKQYV IKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1ui0A
Description:	Crystal Structure Of Uracil-DNA Glycosylase From Thermus Thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA N-glycosylase activity	4.49770781621045	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	4.14479139843076	bayes_pls_golite062009
uracil DNA N-glycosylase activity	3.90350764950421	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	2.96262005834299	bayes_pls_golite062009
catalytic activity	1.96155289609929	bayes_pls_golite062009
hydrolase activity	1.80710505371922	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: