YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261600, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261600, gi|....

Description	E-value	Query Range	Subject Range
GPDA_BACCN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 ...	9.0E-67	[1..339]	[1..339]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	2.0E-66	[2..332]	[1..331]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	3.0E-66	[2..332]	[1..331]
gi\|229078787, gi... - gi\|229078787\|ref\|ZP_04211340.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus Rock4-... gi\|228674338, gi... - gi\|229109060\|ref\|ZP_04238660.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus Rock1-... gi\|228725997, gi... - gi\|229043349\|ref\|ZP_04191067.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus AH676]... gi\|228713909, gi... - gi\|229069157\|ref\|ZP_04202448.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus F65185... gi\|228633666, gi... - gi\|229149802\|ref\|ZP_04278031.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus m1550]... gi\|228605500, gi... - gi\|229178012\|ref\|ZP_04305384.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus 172560... gi\|229126918, gi... - gi\|229126918\|ref\|ZP_04255929.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus BDRD-C... gi\|229144203, gi... - gi\|229144203\|ref\|ZP_04272617.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus cereus BDRD-S... GPDA_BACCR - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 21... GPDA_BACC4 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus (strain B4264) GN=gpsA PE=3 SV=1 gi\|206734253, gi... - gi\|206970617\|ref\|ZP_03231569.1\| glycerol-3-phosphate dehydrogenase (NAD(P)+) [Bacillus cereus AH1134... gi\|228807706, gi... - gi\|228951981\|ref\|ZP_04114078.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus thuringiensis... gi\|228801796, gi... - gi\|228957880\|ref\|ZP_04119620.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus thuringiensis... gi\|228920315, gi... - gi\|228920315\|ref\|ZP_04083662.1\| Glycerol-3-phosphate dehydrogenase [NAD(P)+] [Bacillus thuringiensis...	4.0E-66	[1..340]	[1..340]
GPDA_BACWK - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus weihenstephanensis (strain KBAB4) GN=gpsA P...	2.0E-65	[1..340]	[1..340]
GPDA_LEPBJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	3.0E-65	[2..332]	[1..331]
GPDA_LEPBL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (stra...	5.0E-65	[2..332]	[1..331]
GPDA_GEOSL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12... GPDA_GEOSL - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacter sulfurreducens GN=gpsA PE=3 SV=1	9.0E-65	[3..332]	[4..333]
GPDA_STAHJ - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gps...	1.0E-64	[1..332]	[1..332]
gi\|47556884, gi\|... - gi\|47565967\|ref\|ZP_00237005.1\| NAD-dependent glycerol-3-phosphate dehydrogenase superfamily [Bacillu...	5.0E-64	[1..340]	[1..340]

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Predicted Domain #1

Region A:
Residues: [1-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKITVVGAG SWGTALAMVL ADNGHDVRIW GNRSELMDEI NTKHENSRYL PGITLPSTIV  60
   61 AYSSLEEALV DVNVVLIVVP TKAYREVLQD MKKYVAGPTT WIHASKGIEP GTSKRISEVI 120
  121 EEEIPEDLIK DVVVLSGPSH AEEVGLRQAT TVTSAAKRME AAEEVQDLFM NSYFRVYTNP 180
  181 DIVGVELGGA LKNIIALAAG ITDGLGLGDN AKAALMTRGL TEIARLGRKM GGNPLTFAGL 240
  241 TGMGDLIVTC TSVHSRNWRA GNMLGKGHSL EEVLESMGMV VEGVRTTKAA HELAEKMEVE 300
  301 MPITAALYDV LFNGNNVKDA VGSLMGRVRK HEVEAIPDLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.09691
Match:	1z82A
Description:	Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits