YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255427, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	591 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255427, gi|....

Description	E-value	Query Range	Subject Range
gi\|21399397, gi\|... - gi\|65318845\|ref\|ZP_00391804.1\| COG0642: Signal transduction histidine kinase [Bacillus anthracis str...	9.0E-79	[1..591]	[1..591]
gi\|29895170, gi\|... - gi\|30019626\|ref\|NP_831257.1\| sensor protein resE [Bacillus cereus ATCC 14579], gi\|29895170\|gb\|AAP084... gi\|228639184, gi... - gi\|229144176\|ref\|ZP_04272590.1\| hypothetical protein bcere0012_13390 [Bacillus cereus BDRD-ST24], gi... gi\|228656831, gi... - gi\|229126891\|ref\|ZP_04255903.1\| hypothetical protein bcere0015_13480 [Bacillus cereus BDRD-Cer4], gi...	2.0E-77	[1..591]	[1..591]
gi\|228914151, gi... - gi\|228914151\|ref\|ZP_04077769.1\| hypothetical protein bthur0012_13850 [Bacillus thuringiensis serovar... gi\|225787288, gi... - gi\|225863440\|ref\|YP_002748818.1\| sensor histidine kinase ResE [Bacillus cereus 03BB102], gi\|22578728... gi\|218536187, gi... - gi\|218902687\|ref\|YP_002450521.1\| sensor histidine kinase ResE [Bacillus cereus AH820], gi\|218536187\|... gi\|196047621, gi... - gi\|196047621\|ref\|ZP_03114828.1\| sensor histidine kinase ResE [Bacillus cereus 03BB108], gi\|196021535... gi\|195990566, gi... - gi\|196036837\|ref\|ZP_03104226.1\| sensor histidine kinase ResE [Bacillus cereus W], gi\|195990566\|gb\|ED... gi\|229121119, gi... - gi\|229121119\|ref\|ZP_04250356.1\| hypothetical protein bcere0016_14250 [Bacillus cereus 95/8201], gi\|2... gi\|228814412, gi... - gi\|228945177\|ref\|ZP_04107533.1\| hypothetical protein bthur0007_13400 [Bacillus thuringiensis serovar... gi\|228932863, gi... - gi\|228932863\|ref\|ZP_04095730.1\| hypothetical protein bthur0009_13350 [Bacillus thuringiensis serovar... gi\|228926608, gi... - gi\|228926608\|ref\|ZP_04089677.1\| hypothetical protein bthur0010_13240 [Bacillus thuringiensis serovar... gi\|118416258, gi... - gi\|118477033\|ref\|YP_894184.1\| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam], gi\|118... gi\|228599621, gi... - gi\|229183772\|ref\|ZP_04310989.1\| hypothetical protein bcere0004_13400 [Bacillus cereus BGSC 6E1], gi\|... gi\|49477249, gi\|... - gi\|49477249\|ref\|YP_035694.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ...	3.0E-77	[1..591]	[1..591]
gi\|42736596, gi\|... - gi\|42780676\|ref\|NP_977923.1\| sensor histidine kinase ResE [Bacillus cereus ATCC 10987], gi\|42736596\|...	7.0E-77	[1..591]	[1..591]
gi\|52143870, gi\|... - gi\|52143870\|ref\|YP_082958.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51977339\|gb\|AAU18889...	8.0E-77	[1..591]	[1..591]
gi\|89212829 - gi\|89212829\|gb\|ABD63915.1\| kinase sensor ResE [Bacillus cereus]	3.0E-76	[1..591]	[1..591]
gi\|152023753, gi... - gi\|89203146\|ref\|ZP_01181841.1\| PAS [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89148817\|gb\|EAR...	1.0E-73	[1..587]	[1..587]
gi\|47569150, gi\|... - gi\|47569150\|ref\|ZP_00239838.1\| sensor histidine kinase SrrB, putative [Bacillus cereus G9241], gi\|47...	3.0E-73	[13..591]	[2..580]
gi\|52004036, gi\|... - gi\|52786196\|ref\|YP_092025.1\| ResE1 [Bacillus licheniformis ATCC 14580], gi\|52348698\|gb\|AAU41332.1\| R...	4.0E-73	[1..588]	[1..585]
RESE_BACSU - Sensor histidine kinase ResE OS=Bacillus subtilis (strain 168) GN=resE PE=1 SV=1 gi\|221314552 - gi\|221314552\|ref\|ZP_03596357.1\| two-component sensor histidine kinase [Bacillus subtilis subsp. subt... RESE_BACSU - Sensor histidine kinase resE OS=Bacillus subtilis GN=resE PE=3 SV=1 gi\|221323750 - gi\|221323750\|ref\|ZP_03605044.1\| two-component sensor histidine kinase [Bacillus subtilis subsp. subt... gi\|221319474 - gi\|221319474\|ref\|ZP_03600768.1\| two-component sensor histidine kinase [Bacillus subtilis subsp. subt...	5.0E-73	[1..587]	[1..586]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWRSVVGKL WMTILLLVSF VLGFVAILLS QFFRTYYVDM SEARLQKVAT SVSELIEEGA  60
   61 DVKTIENIAY KFSDPLSRII IVEEGKEISS SPKQEGLVTL TIDDLKEDKE LAAVFTDKKE 120
  121 IKNKVRKASN SRKNKNTEND IMIVGKPVQS K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NESAVFVYES LQVPIQGMER TTDFIFLSAG IAIILTTFFA FFLSTRITAP LRKMREVAFE  60
   61 VSRGKFDAKA PMVSQDEIGE LATALNQMGK QLKFNMNALQ QEKEQLASIL SSMADGVITL 120
  121 NQEGEVVVIN PPAEHFLQVW QEEKEIELSK KLPSELVELF HLVVESEQQQ VVGINLQK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.66
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [330-591]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNYVVLMTPL YNQTKIRGAV AVLRDMTEER RLEKMRQDFI ANVSHELRTP MVMLQGYSEA  60
   61 ILDDIVQTKE EINEFVQIIY DESVRLGKLV NELLDLARME SGNVELHIGE VDIHPFVEKI 120
  121 GRKFQGIAKD KEVALTVDFK DSIEQYPFDA DRMEQVLTNL IDNAIRHTNA GGHVTLVIDT 180
  181 KNNGLIFEVQ DSGAGIPEED IPFLFDRFYK ADKARTRGKK GGTGLGLAIA KNIVQGHGGK 240
  241 ISVSSVVGEG TTFSVYLPNR II

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits