YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261570, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	541 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261570, gi|....

Description	E-value	Query Range	Subject Range
gi\|65318842, gi\|... - gi\|65318842\|ref\|ZP_00391801.1\| COG1333: ResB protein required for cytochrome c biosynthesis [Bacillu...	0.0	[1..541]	[1..541]
gi\|47554218, gi\|... - gi\|47569147\|ref\|ZP_00239835.1\| resb protein [Bacillus cereus G9241], gi\|47554218\|gb\|EAL12581.1\| resb...	0.0	[1..541]	[1..541]
gi\|51977342, gi\|... - gi\|52143873\|ref\|YP_082955.1\| cytochrome c biogenesis protein [Bacillus cereus E33L], gi\|51977342\|gb\|...	0.0	[1..541]	[1..541]
gi\|42736593, gi\|... - gi\|42780673\|ref\|NP_977920.1\| resB protein [Bacillus cereus ATCC 10987], gi\|42736593\|gb\|AAS40528.1\| r...	0.0	[1..541]	[1..541]
gi\|49332607, gi\|... - gi\|49481051\|ref\|YP_035691.1\| cytochrome c biogenesis protein [Bacillus thuringiensis serovar konkuki...	0.0	[1..541]	[1..541]
gi\|89208370, gi\|... - gi\|89208370\|ref\|ZP_01186880.1\| ResB-like [Bacillus weihenstephanensis KBAB4], gi\|89153686\|gb\|EAR7374...	0.0	[2..539]	[1..537]
gi\|89203149, gi\|... - gi\|89203149\|ref\|ZP_01181844.1\| ResB-like [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89148820\|...	0.0	[1..541]	[1..542]
gi\|25487320 - pir\|\|B83847 cytochrome c biogenesis resB [imported] - Bacillus halodurans (strain C-125) gi\|10174195, gi\|... - gi\|15614141\|ref\|NP_242444.1\| cytochrome c biogenesis [Bacillus halodurans C-125], gi\|10174195\|dbj\|BA...	0.0	[2..539]	[1..538]
RESB_BACSU - Cytochrome c biogenesis protein ResB OS=Bacillus subtilis (strain 168) GN=resB PE=4 SV=1 gi\|221323753 - gi\|221323753\|ref\|ZP_03605047.1\| required for cytochrome c synthesis [Bacillus subtilis subsp. subtil... gi\|221319477 - gi\|221319477\|ref\|ZP_03600771.1\| required for cytochrome c synthesis [Bacillus subtilis subsp. subtil... gi\|221314555 - gi\|221314555\|ref\|ZP_03596360.1\| required for cytochrome c synthesis [Bacillus subtilis subsp. subtil... RESB_BACSU - Cytochrome c biogenesis protein resB OS=Bacillus subtilis GN=resB PE=4 SV=1	0.0	[2..539]	[1..539]
gi\|56380658, gi\|... - gi\|56420816\|ref\|YP_148134.1\| cytochrome c biogenesis protein [Geobacillus kaustophilus HTA426], gi\|5...	0.0	[2..541]	[1..542]

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Predicted Domain #1

Region A:
Residues: [1-46]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKEIKCECG HVNPIGTVFC EACGKPFESN ENIKLLDMRY EGSARR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.965
Match:	6gatA
Description:	Erythroid transcription factor GATA-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.3809170425304	bayes_pls_golite062009
protein binding	0.792129963915752	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [47-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLTQTKTIVD KIWSFFSSVK VGVWLIVITL AASAIGTIFP QEMYITPGIA PAEYYKQEYG  60
   61 FLGQLYYQLG FNNLYGSWWY MILIASIGIS LVICSLDRVI PLYKAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [153-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKQGVKRHPS FLKRQRLYGT GAPQDGDLER VQKNLKKVNY NVKVEDGNIL AEKGRFSRWG  60
   61 PYVNHIGLII FLFGAMLRFL PSMYVDEALW LRDGETKEIP GTDGQYYLKN EKFIKEVYDK 120
  121 SKDKEVFDEA IDRVGDKMIA KNFQTNAILY KAIGENIAGE KPKLEKVKEA EIRVNEPLKF 180
  181 DQFAVYQVDY KESEFKSMSF NLQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [357-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KENNQKWGPI KVDLTNPIEK YDLGNGYSLE LLNYFPDFYF DENGRPNTKT KLPNNPAFVF  60
   61 KMFTPETPDG EVSFVGIQQN IEADG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [442-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNKYKMSFAG VEMQNATALT VRKDLTLWIL GIGGFIFMVG VIQGMYWNHR RIWIQRVNDE  60
   61 WWIAGHTNKN WFGLKKDIER VLEGTAIPQP NDKVVDKKIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: