YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255376, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	540 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255376, gi|....

Description	E-value	Query Range	Subject Range
gi\|229126839, gi... - gi\|229126839\|ref\|ZP_04255851.1\| Ferredoxin--nitrite reductase [Bacillus cereus BDRD-Cer4], gi\|228656... gi\|229108981, gi... - gi\|229108981\|ref\|ZP_04238582.1\| Ferredoxin--nitrite reductase [Bacillus cereus Rock1-15], gi\|2286744... gi\|30019573, gi\|... - gi\|30019573\|ref\|NP_831204.1\| ferredoxin--nitrite reductase [Bacillus cereus ATCC 14579], gi\|29895117... gi\|229144124, gi... - gi\|229144124\|ref\|ZP_04272539.1\| Ferredoxin--nitrite reductase [Bacillus cereus BDRD-ST24], gi\|228639...	0.0	[1..540]	[1..540]
gi\|47556867, gi\|... - gi\|47566314\|ref\|ZP_00237342.1\| ferredoxin-nitrite reductase [Bacillus cereus G9241], gi\|47556867\|gb\|...	0.0	[1..540]	[1..540]
gi\|42736541, gi\|... - gi\|42780621\|ref\|NP_977868.1\| nitrite reductase [Bacillus cereus ATCC 10987], gi\|42736541\|gb\|AAS40476...	0.0	[1..540]	[1..540]
gi\|49332635, gi\|... - gi\|49481079\|ref\|YP_035640.1\| ferredoxin-nitrite reductase [Bacillus thuringiensis serovar konkukian ...	0.0	[1..540]	[1..540]
gi\|228859511, gi... - gi\|228900105\|ref\|ZP_04064338.1\| Ferredoxin--nitrite reductase [Bacillus thuringiensis IBL 4222], gi\|... gi\|74492096, gi\|... - gi\|75760417\|ref\|ZP_00740460.1\| Ferredoxin--nitrite reductase [Bacillus thuringiensis serovar israele... gi\|229074713, gi... - gi\|229074713\|ref\|ZP_04207734.1\| Ferredoxin--nitrite reductase [Bacillus cereus Rock4-18], gi\|2287084... gi\|228964492, gi... - gi\|228964492\|ref\|ZP_04125604.1\| Ferredoxin--nitrite reductase [Bacillus thuringiensis serovar sotto ... gi\|228668481, gi... - gi\|229114969\|ref\|ZP_04244381.1\| Ferredoxin--nitrite reductase [Bacillus cereus Rock1-3], gi\|22866848...	0.0	[1..540]	[1..540]
gi\|152974949, gi... - gi\|89202131\|ref\|ZP_01180861.1\| Ferredoxin--nitrite reductase [Bacillus cereus subsp. cytotoxis NVH 3...	0.0	[1..540]	[1..540]
gi\|52143922, gi\|... - gi\|52143922\|ref\|YP_082906.1\| ferredoxin-nitrite reductase [Bacillus cereus E33L], gi\|51977391\|gb\|AAU...	0.0	[1..540]	[1..540]
gi\|163939338, gi... - gi\|89207810\|ref\|ZP_01186341.1\| Ferredoxin--nitrite reductase [Bacillus weihenstephanensis KBAB4], gi...	0.0	[1..540]	[1..540]
gi\|113474849, gi... - gi\|71676759\|ref\|ZP_00674499.1\| Ferredoxin--nitrite reductase [Trichodesmium erythraeum IMS101], gi\|7... gi\|6007442 - gi\|6007442\|gb\|AAF00916.1\|AF178846_1 ferredoxin nitrite reductase [Trichodesmium sp. WH9601]	0.0	[12..501]	[10..501]
gi\|1113082 - gi\|1113082\|dbj\|BAA06530.1\| nitrite reductase [Leptolyngbya boryana]	0.0	[11..501]	[8..500]

Back

Predicted Domain #1

Region A:
Residues: [1-540]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYEKVWANN EKLNQTEKNK LKKDGLEIFN DIPYYAENGF ESIPKEEWDA FKWAGLYLQR  60
   61 PKEAGYFMMR VNIPSGIITN AQAEVLASIA EDYGRDVIDI TTRQAIQFHW LEIHQIPDIF 120
  121 KRLARVGLSS AGACGDITRN ITGNPLAGID ANELFDTTHI VKEVYDYFQH NEEFSNLPRK 180
  181 FKMSISSNIY NAANAEINCV AFTPAKKEID GEKKVGFHIK VGGGLSARPY LADELDVFVL 240
  241 PEEVKAVAIA IATIFRDFGY REKRHLARLK FLVADWGAEK FKEKLIEYTG PLQSKGESAL 300
  301 KGWNAGYFYG VQDQKQEGLK YVGFNVPVGR LHAEEMFEIA RIAKQYGNGQ IRTCNSQNFI 360
  361 IPNVPPENVT GLLTEPLFEA ISANPKSFIG HAVSCTGIEY CNLALVETKE RLRKIAEYLD 420
  421 TQIALDVPVR IHMVGCPNSC GQRQIADIGL QGVKMKTKEK GIVEAFEIYV GGTLLDGGAY 480
  481 NQKLKGKIDG EDLPDVLASF ISYFKENKLP AETFYDFVGR VGVETLQIAL NNVLEEVIAS 540
  541

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.39794
Match:	2akjA
Description:	Structure of spinach nitrite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfite reductase (NADPH) activity	10.5477019483845	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	6.9484358652029	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	6.71341182064697	bayes_pls_golite062009
catalytic activity	1.39967796334655	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.747822858523869	bayes_pls_golite062009
oxidoreductase activity	0.272934629796331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: