YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261501, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261501, gi|....

Description	E-value	Query Range	Subject Range
gi\|1314267 - gi\|1314267\|gb\|AAC45419.1\| 3-isopropylmalate dehydrogenase [Pseudomonas aeruginosa] gi\|1314267\|gb\|AA... - 3-isopropylmalate dehydrogenase [Pseudomonas aeruginosa]	0.0	[1..347]	[1..360]
gi\|254229746, gi... - gi\|75854663\|ref\|ZP_00762342.1\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Vibrio sp. Ex25], ...	0.0	[2..344]	[5..360]
gi\|91188768, gi\|... - gi\|91227116\|ref\|ZP_01261600.1\| 3-isopropylmalate dehydrogenase [Vibrio alginolyticus 12G01], gi\|9118...	0.0	[2..344]	[5..360]
LEU3_PSEF5 - 3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=leuB PE=3...	0.0	[1..347]	[1..360]
LEU3_GEOKA - 3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus (strain HTA426) GN=leuB PE=3 SV=1 LEU3_GEOKA - 3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus GN=leuB PE=3 SV=1	0.0	[3..344]	[4..357]
gi\|152983912, gi... - gi\|94412522\|ref\|ZP_01292439.1\| hypothetical protein PaerP_01005695 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..347]	[1..360]
gi\|107102667 - gi\|107102667\|ref\|ZP_01366585.1\| hypothetical protein PaerPA_01003732 [Pseudomonas aeruginosa PACS2] gi\|218890681, gi... - gi\|218890681\|ref\|YP_002439545.1\| 3-isopropylmalate dehydrogenase [Pseudomonas aeruginosa LESB58], gi... gi\|116051114, gi... - gi\|46164051\|ref\|ZP_00136482.2\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Pseudomonas aerugi... LEU3_PSEAE - 3-isopropylmalate dehydrogenase OS=Pseudomonas aeruginosa GN=leuB PE=3 SV=2 LEU3_PSEAE - 3-isopropylmalate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /... gi\|126195191, gi... - gi\|84326201\|ref\|ZP_00974230.1\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Pseudomonas aerugi...	0.0	[1..347]	[1..360]
gi\|84320117, gi\|... - gi\|84320117\|ref\|ZP_00968502.1\| COG0473: Isocitrate/isopropylmalate dehydrogenase [Pseudomonas aerugi...	0.0	[1..347]	[1..360]
gi\|49086956 - gi\|49086956\|gb\|AAT51399.1\| PA3118 [synthetic construct]	0.0	[1..347]	[1..360]
gi\|95109800 - gi\|95109800\|emb\|CAK14505.1\| 3-isopropylmalate dehydrogenase [Pseudomonas entomophila L48] gi\|104780813, gi... - gi\|95109800\|emb\|CAK14505.1\| 3-isopropylmalate dehydrogenase [Pseudomonas entomophila L48], gi\|104780...	0.0	[1..347]	[1..360]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRIVCLAG DGVGPEVMES AKEVLHMVER LYGHHFHLQD EHFGGVAIDL TGQPLPQRTL  60
   61 AACLASDAVL LGAVGGPRWD GAKERPEKGL LALRKGLGVF ANVRPVTVES ATAHLSPLKK 120
  121 ADEIDFVVVR ELTGGIYFSY PKERTDEVAT DTLTYHRHEI ERIVSCAFQL ASKRKKKVTS 180
  181 IDKANVLESS KLWRIVTEEV ALRYPDVELE HILVDAAAME LIRNPGRFDV IVTENLFGDI 240
  241 LSDEASVLAG SLGMLPSASH AEKGPSLYEP IHGSAPDIAG KNKANPIAMM RSVAMMLGQS 300
  301 FGLTREGCAI EEAISAVLKS GKCTADIGGT ETTTSFTKAV MQEMEEQALV GRGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	1v5bA
Description:	The Structure Of The Mutant, S225A and E251L, Of 3-Isopropylmalate Dehydrogenase From Bacillus Coagulans
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits