YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261470, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261470, gi|....

Description	E-value	Query Range	Subject Range
gi\|75701558, gi\|... - gi\|75907833\|ref\|YP_322129.1\| amino acid adenylation [Anabaena variabilis ATCC 29413], gi\|75701558\|gb...	0.0	[3..500]	[546..1041]
gi\|27817222 - gi\|27817222\|gb\|AAO23333.1\| NcpA [Nostoc sp. ATCC 53789]	0.0	[3..502]	[2668..3174]
gi\|49610952, gi\|... - gi\|50120426\|ref\|YP_049593.1\| non-ribosomal peptide synthetase [Pectobacterium atrosepticum SCRI1043]...	0.0	[3..503]	[5831..6328]
gi\|17131741, gi\|... - gi\|17230140\|ref\|NP_486688.1\| peptide synthetase [Nostoc sp. PCC 7120], gi\|17131741\|dbj\|BAB74347.1\| p... gi\|25294032 - pir\|\|AI2136 peptide synthetase [imported] - Nostoc sp. (strain PCC 7120)	0.0	[3..500]	[462..967]
gi\|23128751 - gi\|23128751\|ref\|ZP_00110590.1\| COG1020: Non-ribosomal peptide synthetase modules and related protein...	0.0	[1..503]	[42..544]
gi\|9715733 - gi\|9715733\|emb\|CAC01603.1\| peptide synthetase [Anabaena circinalis 90]	0.0	[3..498]	[580..1073]
gi\|67855376, gi\|... - gi\|67922760\|ref\|ZP_00516261.1\| Amino acid adenylation [Crocosphaera watsonii WH 8501], gi\|67855376\|g...	0.0	[3..499]	[467..962]

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Predicted Domain #1

Region A:
Residues: [1-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLEQIEKW AIETPDQTAF VWRDAKITYK QLKEDSDALA HWISSEYPDD RSPIMVYGHM  60
   61 QPEMIINFLG CVKAGHAYIP VDLSIPADRV QRIAENSGAK LLLSAAVTVT DLPVRIVSED 120
  121 NLKDIFFTHK GNTPNPEHAV KGDENFYIIY TSGSTGNPKG VQITYNCLVS FTQWAVEDFN 180
  181 LQTGQVFLNQ APFSFDLSVM DIYPSLVTGG TLWAIDKDMI ARPKDLFASL EQSDIQVWTS 240
  241 TPSFAEMCLM EASFSESMLP NMKTFLFCGE VLPNEVARKL IERFPKATIM NTYGPTEATV 300
  301 AVTGIHVTEE VLDQYKSLPV GYCKSDCRLL IMKEDGTIAP DGEKGEIVIV GPSVSVGYLG 360
  361 SPELTEKAFT MIDGERAYKT GDAGYVENGL LFYNGRLDFQ IKLHGYRMEL EEIEHHLRAC 420
  421 SYVEGAVIVP IKKGEKYDYL LAVVVPGEHS FEKEFKLTSA IKKELNERLP NYMIPRKFMY 480
  481 QSSIPMTPNG KVDRKKLLSE VTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1amuA
Description:	Phenylalanine activating domain of gramicidin synthetase 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits