YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255261, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255261, gi|....

Description	E-value	Query Range	Subject Range
gi\|53759202, gi\|... - gi\|91776577\|ref\|YP_546333.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Me...	3.0E-62	[2..238]	[16..279]
gi\|109701928, gi... - gi\|76795128\|ref\|ZP_00777565.1\| Prepilin peptidase [Pseudoalteromonas atlantica T6c], gi\|76589596\|gb\|...	2.0E-60	[1..238]	[13..287]
tr\|Q888U2\|Q888U2... - Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Pseudomonas syringae pv. tomato (s... gi\|28868144, gi\|... - gi\|28868144\|ref\|NP_790763.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. tomato ...	4.0E-60	[1..237]	[12..276]
gi\|71735543, gi\|... - gi\|71735543\|ref\|YP_273100.1\| type IV pilus prepilin peptidase PilD [Pseudomonas syringae pv. phaseol...	7.0E-60	[1..237]	[12..276]
gi\|66044051, gi\|... - gi\|66044051\|ref\|YP_233892.1\| prepilin peptidase [Pseudomonas syringae pv. syringae B728a], gi\|632547...	2.0E-59	[1..237]	[12..276]
gi\|224173107, gi... - gi\|224173107\|ref\|XP_002339727.1\| predicted protein [Populus trichocarpa], gi\|222832127\|gb\|EEE70604.1... gi\|68559756, gi\|... - gi\|94312041\|ref\|YP_585251.1\| type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A [Ra...	3.0E-59	[2..237]	[15..277]
LEP4_PSEST - Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Pseudomonas stutzeri GN=pilD PE=3 ...	4.0E-59	[1..238]	[12..277]
gi\|37680965, gi\|... - gi\|37680965\|ref\|NP_935574.1\| type IV prepilin-like proteins leader peptide processing enzyme [Vibrio...	5.0E-59	[2..239]	[27..294]
gi\|68543123, gi\|... - gi\|68543123\|ref\|ZP_00582838.1\| Prepilin peptidase [Shewanella baltica OS155], gi\|68519167\|gb\|EAN4271...	2.0E-58	[2..237]	[14..293]
gi\|113910144, gi... - gi\|160877166\|ref\|YP_001556482.1\| prepilin peptidase [Shewanella baltica OS195], gi\|160862688\|gb\|ABX5...	3.0E-58	[2..237]	[14..293]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTYVYALLV GMVFGSFFML IAMRIPLGES IIIPRSHCHY CKYVLKPKEL IPIISFCIQR  60
   61 GRCTNCKRKI SILYVIFELV TGIICLLTVY MI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2ozyA
Description:	No description for 2ozyA was found.

Predicted Domain #2

Region A:
Residues: [93-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVERELIIIL SLFSLLLIIS VTDYIYMLIP NRILAWFSCL LILECVFVPL VTWTESIVGS  60
   61 GVIFILLYCM QKIYPEGLGG GDIKLLSLLG FIAGLKGVFM ILFLSSFFSL CFFGAGLVLK 120
  121 RMKMRTQIPF GPFISLGAIC YMLVTYAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.221849
Match:	PF01478.9
Description:	No description for PF01478.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits