YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255251, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255251, gi|....

Description	E-value	Query Range	Subject Range
gi\|74492523, gi\|... - gi\|75760004\|ref\|ZP_00740071.1\| (S)-2-hydroxy-acid oxidase subunit GlcF [Bacillus thuringiensis serov...	0.0	[1..442]	[1..442]
gi\|49480034, gi\|... - gi\|49480034\|ref\|YP_035522.1\| (S)-2-hydroxy-acid oxidase [Bacillus thuringiensis serovar konkukian st...	0.0	[1..442]	[1..442]
gi\|89157539, gi\|... - gi\|89204478\|ref\|ZP_01183055.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DU...	0.0	[1..442]	[1..442]
gi\|42736402, gi\|... - gi\|42780483\|ref\|NP_977730.1\| glycolate oxidase, iron-sulfur subunit, putative [Bacillus cereus ATCC ...	0.0	[1..442]	[1..442]
gi\|30019447, gi\|... - gi\|30019447\|ref\|NP_831078.1\| (S)-2-hydroxy-acid oxidase subunit GlcF [Bacillus cereus ATCC 14579], g...	1.0E-99	[1..442]	[1..442]
gi\|52144040, gi\|... - gi\|52144040\|ref\|YP_082788.1\| (S)-2-hydroxy-acid oxidase [Bacillus cereus E33L], gi\|51977509\|gb\|AAU19...	1.0E-99	[1..442]	[1..442]
gi\|47566181, gi\|... - gi\|47566181\|ref\|ZP_00237209.1\| cysteine-rich domain family [Bacillus cereus G9241], gi\|47556734\|gb\|E...	2.0E-99	[1..442]	[1..442]
gi\|89151096, gi\|... - gi\|89200935\|ref\|ZP_01179684.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DU...	4.0E-95	[1..442]	[1..442]
gi\|67921007, gi\|... - gi\|67921007\|ref\|ZP_00514526.1\| 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DU...	1.0E-91	[2..440]	[6..450]
gi\|56911254, gi\|... - gi\|56965011\|ref\|YP_176742.1\| glycolate oxidase iron-sulfur subunit [Bacillus clausii KSM-K16], gi\|56...	1.0E-91	[1..439]	[1..440]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLNKENIQ KEFKERLSED ELLNCMRCGF CLPTCPTYIQ SGYKESHSPR GRIALMKAVV  60
   61 DGLIEPDEDV ENTLNVCLGC RACEPVCPSG VNYGHLLEEA RDIINQNKKF SMPVRAVRKV 120
  121 VFEELFPHQN RMRTLTGLIG FYQRSGLQTI THKTGIMKLF PETLATMDLV LPKVPKMKAM 180
  181 KDRPTFLPAE STKKKQVAFF TGCLMDTMFL ETNNATMKLL QLAGCDIVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	4.7946737640663	bayes_pls_golite062009
NADH dehydrogenase activity	3.13953145151561	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	2.76338281383262	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	2.70037803782769	bayes_pls_golite062009
electron carrier activity	2.45164586846912	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	2.09041948600744	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.80621486978907	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	1.5619384041388	bayes_pls_golite062009
iron-sulfur cluster binding	1.48723437664337	bayes_pls_golite062009
metal cluster binding	1.48723437664337	bayes_pls_golite062009
oxidoreductase activity	0.660370448422897	bayes_pls_golite062009
catalytic activity	0.488483980994331	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.0827182678048914	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [230-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKTQSCCGAL HGHAGEKSGA KELAKRNIKA FEDLNIDYII TNAGGCGAYL VDYDYLLKDD  60
   61 PQWAGRAKQF VSKIKDITAI LVELDF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.431798
Match:	PF02754.7
Description:	No description for PF02754.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.661	0.122	electron carrier activity	d.109.1	Actin depolymerizing proteins
View	Download	0.704	0.028	electron carrier activity	c.78.2	Aspartate/glutamate racemase
View	Download	0.647	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.643	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.626	N/A	N/A	c.78.2	Aspartate/glutamate racemase

Predicted Domain #3

Region A:
Residues: [316-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKRNDLRLTP QIITYQDSCH LRNVMRTSSE PRMLLEAIQG ATYREMKDAD RCCGSAGIYN  60
   61 IVHSELSMEF LDYKMDRVHE TDATTIVTAN PGCLLQMKLG IEREGLSHKM RGIHIVDLLL 120
  121 EAIETNS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.568636
Match:	PF02754.7
Description:	No description for PF02754.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: