YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261358, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	444 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261358, gi|....

Description	E-value	Query Range	Subject Range
gi\|82400746, gi\|... - gi\|82501257\|ref\|ZP_00886614.1\| Rhodanese-like [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82...	3.0E-93	[1..442]	[1..442]
gi\|52144086, gi\|... - gi\|52144086\|ref\|YP_082743.1\| pyridine nucleotide-disulfide oxidoreductase; NADH dehydrogenase [Bacil...	3.0E-93	[1..444]	[1..444]
gi\|642030, gi\|39... - gi\|642030\|gb\|AAB59997.1\| NADH oxidase, gi\|3916179\|gb\|AAC78811.1\| NADH oxidase [Brachyspira hyodysent...	7.0E-93	[1..444]	[1..452]
gi\|42736365, gi\|... - gi\|42780446\|ref\|NP_977693.1\| pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus cereus ...	2.0E-92	[1..444]	[1..444]
gi\|228899933, gi... - gi\|228899933\|ref\|ZP_04064174.1\| Pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus thur... gi\|75760797, gi\|... - gi\|75760797\|ref\|ZP_00740815.1\| NADH dehydrogenase [Bacillus thuringiensis serovar israelensis ATCC 3...	2.0E-92	[1..444]	[1..444]
gi\|49331550, gi\|... - gi\|49479994\|ref\|YP_035485.1\| pyridine nucleotide-disulfide oxidoreductase; NADH dehydrogenase [Bacil... gi\|254726245 - gi\|254726245\|ref\|ZP_05188027.1\| pyridine nucleotide-disulfide oxidoreductase; NADH dehydrogenase [Ba... gi\|228926389, gi... - gi\|228926389\|ref\|ZP_04089461.1\| Pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus thur... gi\|228913925, gi... - gi\|228913925\|ref\|ZP_04077550.1\| Pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus thur... gi\|196035313, gi... - gi\|196035313\|ref\|ZP_03102718.1\| pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus cere...	3.0E-92	[1..444]	[1..444]
gi\|89159869, gi\|... - gi\|89210607\|ref\|ZP_01188995.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:SirA-like...	4.0E-92	[2..443]	[4..446]
gi\|110798718, gi... - gi\|110798718\|ref\|YP_695180.1\| pyridine nucleotide-disulphide oxidoreductase family protein [Clostrid... gi\|182380510, gi... - gi\|182380510\|gb\|EDT77989.1\| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridiu...	8.0E-92	[2..443]	[4..444]
gi\|18309716, gi\|... - gi\|18309716\|ref\|NP_561650.1\| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridi...	1.0E-91	[2..443]	[4..444]
gi\|110803216, gi... - gi\|110803216\|ref\|YP_698041.1\| pyridine nucleotide-disulphide oxidoreductase family protein [Clostrid...	1.0E-91	[2..443]	[4..444]

Back

Predicted Domain #1

Region A:
Residues: [1-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYVIIGGDA AGMSAAMQIV RNDENANVVT LEKGEIYSYA QCGLPYVISG AIASTEKLIA  60
   61 RNVKTFRDKY GIDAKVRHEV TKVDTEKKIV YAEHTKTKDV FEFSYDRLLI ATGVRPVMPE 120
  121 WEGRDLQGVH LLKTIPDAER ILKTLETNKV EDVTIIGGGA IGLEMAETFV ELGKKVRMIE 180
  181 RNDHIGTIYD GDMAEYIYKE ADKHHIEILT NENVKAFKGN ERVEAVETDK GTYKADLVLV 240
  241 SVGVKPNTDF LEGTNIRTNH KGAIEVNAYM QTNVQDVYAA GDCATHYHVI KEIHDHIPIG 300
  301 TTANKQGRLA GLNMLDKRRA FKGTLGTGII KFMNLTLART GLNEKEAKGL HIPYKTVKVD 360
  361 STNMAGYYPN AKPLYLKLLY RSDTKQLLGG QVIGEEGVDK RIDVIAMALF NKMSIHDLED 420
  421 VDLSYAPPYN SVWDPIQQAA RRAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.522879
Match:	1f8wA
Description:	NADH peroxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	4.32669900343685	bayes_pls_golite062009
oxidoreductase activity	3.69067315875275	bayes_pls_golite062009
catalytic activity	2.72883626464817	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.01097953319687	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.81765036027149	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.66535683920169	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: