YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261349, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261349, gi|....

Description	E-value	Query Range	Subject Range
gi\|17133948, gi\|... - gi\|17232303\|ref\|NP_488851.1\| tryptophan synthase subunit alpha [Nostoc sp. PCC 7120], gi\|17133948\|db... gi\|25291896 - pir\|\|AC2407 tryptophan synthase alpha chain [imported] - Nostoc sp. (strain PCC 7120)	1.0E-85	[4..257]	[6..264]
TRPA1_ARATH - Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2	9.0E-85	[2..256]	[13..273]
TRPA_SYNP2 - Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA P...	2.0E-84	[4..256]	[6..263]
gi\|67925738, gi\|... - gi\|67925738\|ref\|ZP_00519045.1\| Tryptophan synthase, alpha chain [Crocosphaera watsonii WH 8501], gi\|...	3.0E-84	[6..256]	[8..263]
gi\|186464184, gi... - gi\|23128273\|ref\|ZP_00110124.1\| COG0159: Tryptophan synthase alpha chain [Nostoc punctiforme PCC 7310...	4.0E-84	[4..258]	[6..261]
gi\|27262488 - gi\|27262488\|gb\|AAN87525.1\| Tryptophan synthase alpha chain [Heliobacillus mobilis]	1.0E-83	[5..256]	[13..270]
TRPA_SYNP6 - Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN... TRPA_SYNE7 - Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1	3.0E-83	[6..257]	[8..260]
TRPA_ANAVT - Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 S...	5.0E-83	[4..257]	[6..264]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVERIKAAF ENGKKAFIPY VMGGDGGLEI LKERIRFLDE AGASIVEIGI PFSDPVADGP  60
   61 TIQRAGKRAL DSGVTVKGIF QALIEVRKEV QIPFVLMTYL NPVLAFGKER FIENCMEAGV 120
  121 DGIIVPDLPY EEQDIIAPLL REANIALIPL VTVTSPIERI KKITSESEGF VYAVTVAGVT 180
  181 GVRQNFKDEI HSYLEKVKSH THLPVVAGFG ISTKEHVEEM VTICDGVVVG SKVIELLENE 240
  241 KREEICEFIQ ATKQKEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	2ekcA
Description:	No description for 2ekcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits