YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255177, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255177, gi|....

Description	E-value	Query Range	Subject Range
gi\|33637041 - gi\|33637041\|gb\|AAQ23679.1\| glucose-1-phosphate thymidyltransferase [Geobacillus stearothermophilus]	1.0E-59	[1..243]	[1..247]
gi\|68196230, gi\|... - gi\|69244639\|ref\|ZP_00602903.1\| Glucose-1-phosphate thymidylyltransferase, long form [Enterococcus fa... gi\|48826109 - ref\|ZP_00287334.1\| COG1209: dTDP-glucose pyrophosphorylase [Enterococcus faecium]	2.0E-59	[1..243]	[1..247]
gi\|227175529, gi... - gi\|227555318\|ref\|ZP_03985365.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis HH2... gi\|229309642, gi... - gi\|229545292\|ref\|ZP_04434017.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis TX1... gi\|3608394\|gb\|AA... - putative glucose-1-phosphate thymidyl transferase [Enterococcus faecalis] gi\|227520249, gi... - gi\|227520249\|ref\|ZP_03950298.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis TX0... gi\|29376702, gi\|... - gi\|29376702\|ref\|NP_815856.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis V583],... gi\|3608394 - gi\|3608394\|gb\|AAC35920.1\| putative glucose-1-phosphate thymidyl transferase [Enterococcus faecalis] gi\|229549527, gi... - gi\|229549527\|ref\|ZP_04438252.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis ATC... gi\|238829616, gi... - gi\|238857705\|ref\|ZP_04647935.1\| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis TUS...	2.0E-59	[1..243]	[1..247]
gi\|45250012 - gi\|45250012\|gb\|AAS55725.1\| glucose-1-phosphate thymidyltransferase [Aneurinibacillus thermoaerophilu...	7.0E-59	[1..243]	[1..247]
gi\|46241698 - gi\|46241698\|gb\|AAS83083.1\| putative glucose-1-P thymidylyltransferase [Azospirillum brasilense]	8.0E-59	[1..243]	[1..247]
gi\|56911697, gi\|... - gi\|56965453\|ref\|YP_177185.1\| glucose 1-phosphate thymidyltransferase [Bacillus clausii KSM-K16], gi\|...	1.0E-58	[1..243]	[1..247]
gi\|238714345, gi... - gi\|77957830\|ref\|ZP_00821876.1\| COG1209: dTDP-glucose pyrophosphorylase [Yersinia bercovieri ATCC 439...	2.0E-58	[1..243]	[1..247]
gi\|77960414 - gi\|77960414\|ref\|ZP_00824286.1\| COG1209: dTDP-glucose pyrophosphorylase [Yersinia mollaretii ATCC 439...	2.0E-58	[1..243]	[21..267]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIILAGGT GSRLYPITKV TNKHLLPVGR YPMIYHAVYK LKQCDITDIM IITGKEHMGD  60
   61 VVSFLGSGQE FGVSFTYRVQ DKAGGIAQAL GLCEDFVGND RMVVILGDNI FSDDIRPYVE 120
  121 EFTNQKEGAK VLLQSVDDPE RFGVANIQNR KIIEIEEKPK EPKSSYAVTG IYLYDSKVFS 180
  181 YIKELKPSAR GELEITDINN WYLKRGVLTY NEMSGWWTDA GTHVSLQRAN ALARDINFGK 240
  241 QFNGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1h5rB
Description:	RmlA (RfbA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uridylyltransferase activity	3.01114847035047	bayes_pls_golite062009
catalytic activity	2.25720704697246	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.18391876134438	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.05945784653618	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	1.31116473821178	bayes_pls_golite062009
cytidylyltransferase activity	1.30540294475078	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
nucleotidyltransferase activity	0.80808530959278	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.696745721981411	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00302319544700058	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: