YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254880, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254880, gi|....

Description	E-value	Query Range	Subject Range
gi\|52144170, gi\|... - gi\|52144170\|ref\|YP_082658.1\| alpha-amylase family protein [Bacillus cereus E33L], gi\|51977639\|gb\|AAU...	1.0E-71	[1..433]	[1..433]
gi\|42780344, gi\|... - gi\|42780344\|ref\|NP_977591.1\| alpha-amylase family protein [Bacillus cereus ATCC 10987], gi\|42736263\|...	5.0E-71	[1..433]	[1..433]
gi\|49328700, gi\|... - gi\|49477144\|ref\|YP_035397.1\| alpha-amylase family protein [Bacillus thuringiensis serovar konkukian ...	6.0E-71	[3..433]	[1..431]
gi\|29894855, gi\|... - gi\|30019312\|ref\|NP_830943.1\| Alpha-amylase [Bacillus cereus ATCC 14579], gi\|29894855\|gb\|AAP08144.1\| ...	3.0E-68	[3..433]	[1..431]
gi\|163861250, gi... - gi\|89204619\|ref\|ZP_01183196.1\| Alpha amylase, catalytic region [Bacillus weihenstephanensis KBAB4], ...	2.0E-66	[1..432]	[19..450]
gi\|47552644, gi\|... - gi\|47570686\|ref\|ZP_00241284.1\| alpha-amylase [Bacillus cereus G9241], gi\|47552644\|gb\|EAL11097.1\| alp...	2.0E-66	[1..433]	[1..433]
gi\|53796382 - ref\|ZP_00357358.1\| COG0366: Glycosidases [Chloroflexus aurantiacus] gi\|222448426, gi... - gi\|222524547\|ref\|YP_002569018.1\| trehalose synthase [Chloroflexus sp. Y-400-fl], gi\|222448426\|gb\|ACM... gi\|76166574, gi\|... - gi\|76258490\|ref\|ZP_00766145.1\| Alpha amylase, catalytic subdomain:Alpha amylase, catalytic subdomain...	4.0E-51	[29..344]	[14..327]
gi\|78357396, gi\|... - gi\|78357396\|ref\|YP_388845.1\| alpha amylase domain-containing protein [Desulfovibrio desulfuricans su...	4.0E-51	[31..344]	[11..322]
gi\|114705251, gi... - gi\|114705251\|ref\|ZP_01438159.1\| Putative trehalose synthase [Fulvimarina pelagi HTCC2506], gi\|114540...	4.0E-50	[16..344]	[5..331]
gi\|84365771, gi\|... - gi\|84621831\|ref\|YP_449203.1\| trehalose synthas [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|84365...	5.0E-50	[15..344]	[3..331]

Back

Predicted Domain #1

Region A:
Residues: [1-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVGKIHTRK LFICFCLAVV LFVPIHTFAD EKREWRDEVI YSIMIDRFNN GEPKNDKQLE  60
   61 VGNLEGYQGG DIRGIIKRLD YIKEIGFTTV MLSPLFESVK YDGVDVRNFQ KVNEHFGTEN 120
  121 DVKELVQEAH TKGMKVILQF PLGENEQQVI DSMKWWVKEV DLDASYVMHS EKKSPAFWDD 180
  181 VQKDMQVIKK DFRVMTKEDS EYNEKIVESF SKADVSVKSL YDVSKKDEEF ITFLDNQDTK 240
  241 RFARIAKENM NYPPSRLKLA LTYLLTSPGI PNFYYGTEIA LDGGDTPDNR RLMDFKSDEK 300
  301 FMQHITKLGE LRQMRPSLRR GTFELLYDKN GMSVLKRKYK GEVTLVAINN TKETQKVALP 360
  361 ASTIGEKQEL RGLLEDEIIR EENGKFYLVL KREESNVYKV NRETGVNWLF ISLIVGVNVL 420
  421 FITFLIAVKK RRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1gviA
Description:	Maltogenic amylase, N-terminal domain N; Maltogenic amylase; Maltogenic amylase, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
hydrolase activity	1.107656067558	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: