YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254859, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254859, gi|....

Description	E-value	Query Range	Subject Range
gi\|49330691, gi\|... - gi\|49479135\|ref\|YP_035370.1\| competence transcription factor [Bacillus thuringiensis serovar konkuki...	1.0E-72	[1..193]	[1..193]
gi\|42780311, gi\|... - gi\|42780311\|ref\|NP_977558.1\| competence transcription factor, putative [Bacillus cereus ATCC 10987],...	2.0E-72	[1..193]	[1..193]
gi\|30019289, gi\|... - gi\|30019289\|ref\|NP_830920.1\| competence transcription factor [Bacillus cereus ATCC 14579], gi\|298948... gi\|218159150, gi... - gi\|218231193\|ref\|YP_002365922.1\| putative competence transcription factor [Bacillus cereus B4264], g...	4.0E-72	[1..193]	[1..193]
gi\|52144194, gi\|... - gi\|52144194\|ref\|YP_082636.1\| competence transcription factor [Bacillus cereus E33L], gi\|51977663\|gb\|...	1.0E-71	[1..193]	[1..193]
gi\|229154800, gi... - gi\|229154800\|ref\|ZP_04282915.1\| ComK [Bacillus cereus ATCC 4342], gi\|228628748\|gb\|EEK85460.1\| ComK [... gi\|47555791, gi\|... - gi\|47567596\|ref\|ZP_00238307.1\| ComK family protein [Bacillus cereus G9241], gi\|47555791\|gb\|EAL14131....	9.0E-71	[1..193]	[1..193]
gi\|229010526, gi... - gi\|229010526\|ref\|ZP_04167728.1\| ComK [Bacillus mycoides DSM 2048], gi\|228750724\|gb\|EEM00548.1\| ComK ... gi\|89156464, gi\|... - gi\|89205670\|ref\|ZP_01184238.1\| ComK [Bacillus weihenstephanensis KBAB4], gi\|89156464\|gb\|EAR76464.1\| ... gi\|229166071, gi... - gi\|229166071\|ref\|ZP_04293833.1\| ComK [Bacillus cereus AH621], gi\|228617380\|gb\|EEK74443.1\| ComK [Baci...	4.0E-70	[1..193]	[1..193]
gi\|2226262 - gi\|2226262\|emb\|CAA74548.1\| competence transcription factor [Bacillus subtilis] gi\|2226262\|emb\|C... - competence transcription factor [Bacillus subtilis]	1.0E-65	[1..190]	[11..192]
gi\|89201745, gi\|... - gi\|89201745\|ref\|ZP_01180481.1\| ComK [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89150257\|gb\|EA...	2.0E-65	[1..193]	[1..193]
COMK_BACSU - Competence transcription factor OS=Bacillus subtilis GN=comK PE=2 SV=1 gi\|221322402 - gi\|221322402\|ref\|ZP_03603696.1\| competence transcription factor (CTF) [Bacillus subtilis subsp. subt... gi\|221318127 - gi\|221318127\|ref\|ZP_03599421.1\| competence transcription factor (CTF) [Bacillus subtilis subsp. subt... COMK_BACSU - Competence transcription factor OS=Bacillus subtilis (strain 168) GN=comK PE=2 SV=1 gi\|221313204 - gi\|221313204\|ref\|ZP_03595009.1\| competence transcription factor (CTF) [Bacillus subtilis subsp. subt...	4.0E-65	[1..190]	[1..182]
gi\|5929908 - gi\|5929908\|gb\|AAD56637.1\|AF174588_1 ComK [Listeria monocytogenes]	5.0E-62	[3..169]	[2..168]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKVERYVE NYVVNKNTMA LLPVILSEKK IVTRVVEVQD SFFVFQKPLD IIERSCRKHG  60
   61 SSFLGRKEGT KELTHITHKA PIAISPTDQL YFFPTYSYSR KECAWLSHFY IESNKELKDG 120
  121 NLIIRFINGF AVKLEISKTS FENQQNRTAK LRTEYEDRRK KQGNPCFKEV DKNEESRLKP 180
  181 AYESVYFVKE EEV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.823909
Match:	PF06338.2
Description:	No description for PF06338.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits