YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261238, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261238, gi|....

Description	E-value	Query Range	Subject Range
gi\|52144199, gi\|... - gi\|52144199\|ref\|YP_082629.1\| S-layer protein [Bacillus cereus E33L], gi\|51977668\|gb\|AAU19218.1\| S-la...	240.0	[0..1]	[218..1]
gi\|42780302, gi\|... - gi\|42780302\|ref\|NP_977549.1\| S-layer protein, putative [Bacillus cereus ATCC 10987], gi\|42736221\|gb\|...	234.0	[0..1]	[218..1]
gi\|47555783, gi\|... - gi\|47567588\|ref\|ZP_00238299.1\| S-layer homology domain [Bacillus cereus G9241], gi\|47555783\|gb\|EAL14...	233.0	[0..1]	[218..1]
gi\|29894824, gi\|... - gi\|30019281\|ref\|NP_830912.1\| S-layer-like domain-containing protein [Bacillus cereus ATCC 14579], gi...	228.0	[0..1]	[218..2]
gi\|49328656, gi\|... - gi\|49477100\|ref\|YP_035363.1\| S-layer protein [Bacillus thuringiensis serovar konkukian str. 97-27], ...	215.0	[0..3]	[218..68]
gi\|47552259, gi\|... - gi\|47566444\|ref\|YP_016455.2\| s-layer protein, (pxo1-90) [Bacillus anthracis str. 'Ames Ancestor'], g... gi\|20520195, gi\|... - gi\|21392808\|ref\|NP_652888.1\| S-layer protein, [Bacillus anthracis str. A2012], gi\|20520195\|gb\|AAM260... gi\|10956337, gi\|... - pir\|\|B59102 hypothetical protein pXO1-90 - Bacillus anthracis virulence plasmid pXO1, gi\|4894306\|gb\|... gi\|254687811 - gi\|254687811\|ref\|ZP_05151667.1\| S-layer protein [Bacillus anthracis str. CNEVA-9066] gi\|254756500 - gi\|254756500\|ref\|ZP_05208529.1\| S-layer protein [Bacillus anthracis str. Vollum] gi\|170689903, gi... - gi\|170689903\|ref\|ZP_02881073.1\| S-layer protein [Bacillus anthracis str. A0465], gi\|170666278\|gb\|EDT... gi\|229269450, gi... - gi\|229599831\|ref\|YP_002860802.1\| S-layer protein [Bacillus anthracis str. A0248], gi\|229269450\|gb\|AC...	213.0	[0..1]	[218..1]
gi\|49180356, gi\|... - gi\|49186429\|ref\|YP_029681.1\| S-layer protein, putative [Bacillus anthracis str. Sterne], gi\|49180356... gi\|47551901, gi\|... - gi\|47778196\|ref\|YP_020328.2\| s-layer protein, putative [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30263581, gi\|... - gi\|30263581\|ref\|NP_845958.1\| S-layer protein, putative [Bacillus anthracis str. Ames], gi\|30258216\|g...	212.0	[0..1]	[218..19]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKILKVAT ALTIMGGVAF SAEGATAKAE LAAKPQQASQ AIFKDVPAGH WSYEAIQTLA  60
   61 EQEIMLGYGN GVFGFGHNVT REQVAALIYR ALDLDEEFGE DEELESPYND IVDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSTMFPFEVL AVTELGIFTG DEKGNFRPKD TLTRAEMAQV LTRAFGLQVQ GLAGFKDVPK  60
   61 GHWAENAINA VGSNGISVGD GNGNFAPNMK VTREQYAQFL FRAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits