YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254729, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254729, gi|....

Description	E-value	Query Range	Subject Range
gi\|148654385, gi... - gi\|148654385\|ref\|YP_001274590.1\| integral membrane sensor hybrid histidine kinase [Roseiflexus sp. R...	4.0E-39	[3..160]	[275..433]
gi\|77995250, gi\|... - gi\|78043135\|ref\|YP_360865.1\| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901]...	2.0E-38	[1..152]	[296..449]
gi\|109639746, gi... - gi\|68205879\|ref\|ZP_00558076.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	8.0E-37	[1..146]	[400..549]
gi\|89336276, gi\|... - gi\|89896828\|ref\|YP_520315.1\| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51], gi\|893...	8.0E-37	[1..146]	[400..549]
gi\|86609102 - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Cyanobacteria bacteriu... gi\|86557644, gi\|... - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2...	9.0E-37	[1..159]	[891..1056]
gi\|222524154, gi... - gi\|222524154\|ref\|YP_002568625.1\| multi-sensor signal transduction histidine kinase [Chloroflexus sp.... gi\|76261013, gi\|... - gi\|76261013\|ref\|ZP_00768636.1\| PAS [Chloroflexus aurantiacus J-10-fl], gi\|76164063\|gb\|EAO58220.1\| PA...	1.0E-36	[1..155]	[439..595]
gi\|19918507, gi\|... - gi\|20093164\|ref\|NP_619239.1\| sensory transduction histidine kinase [Methanosarcina acetivorans C2A],...	2.0E-36	[3..151]	[568..718]
gi\|51857225, gi\|... - gi\|51893536\|ref\|YP_076227.1\| two-component hybrid sensor and regulator [Symbiobacterium thermophilum...	2.0E-36	[2..154]	[345..502]
gi\|78223629, gi\|... - gi\|78223629\|ref\|YP_385376.1\| Hpt sensor hybrid histidine kinase [Geobacter metallireducens GS-15], g...	2.0E-36	[1..158]	[403..565]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMERFEKIEM KIPAKAEYVA IIRLTMAGVA NRMGFAYDDI EDMKIAISEA CTNIVQHAYK  60
   61 EDVGEIAIVF GLYENRLEIM VADNGVSFDF NNLRSKVGPY DISKPVEHLP ENGLGLYLIN 120
  121 TLMDDIQIMH DEGMTVLMTK YIQREQVEND GNPISTYESY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits