YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177790, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177790, gi|....

Description	E-value	Query Range	Subject Range
gi\|113548993, gi... - gi\|115453843\|ref\|NP_001050522.1\| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi\|113548993...	4.0E-58	[3..433]	[647..1075]
gi\|42551894, gi\|... - gi\|46123591\|ref\|XP_386349.1\| hypothetical protein FG06173.1 [Gibberella zeae PH-1], gi\|42551894\|gb\|E...	1.0E-51	[3..418]	[675..1085]
gi\|30047775 - gi\|30047775\|gb\|AAH50592.1\| SLC47A1 protein [Homo sapiens]	7.0E-48	[3..435]	[56..484]
gi\|38105054, gi\|... - gi\|39942086\|ref\|XP_360580.1\| hypothetical protein MG03123.4 [Magnaporthe grisea 70-15], gb\|EAA51528....	3.0E-47	[3..433]	[293..718]
gi\|7487825, gi\|7... - pir\|\|T05472 hypothetical protein T8O5.110 - Arabidopsis thaliana, gi\|7269035\|emb\|CAB79145.1\| putati...	2.0E-46	[22..455]	[1..416]
gi\|111153730, gi... - gi\|111226198\|ref\|YP_716992.1\| hypothetical protein FRAAL6865 [Frankia alni ACN14a], gi\|111153730\|emb...	5.0E-46	[4..495]	[611..1123]
gi\|73956142 - gi\|73956142\|ref\|XP_546648.2\| PREDICTED: hypothetical protein XP_546648 [Canis familiaris]	7.0E-45	[13..435]	[154..572]
gi\|114668714 - gi\|114668714\|ref\|XP_001144887.1\| PREDICTED: hypothetical protein [Pan troglodytes]	2.0E-44	[3..435]	[36..464]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKFVKGAA ILTITTFLSK VLGSFFQIPL QNIAGDEVLG IFRLVFPVYM IALTLSVAGV  60
   61 PLAISKLIAE LHEKNDQDGI AKLFT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASIIGVIFG VLGFSVIMIG SSMFANMLGG QDTRLPLIVT SFALLIAPYM AVYRGYFQGF  60
   61 GDMIPTGVSQ VIEQFIRVFF MLAIAFLFVY WNKESDVVAG GAMIGSCLGV ITSLIYLRLK 120
  121 YVKSIYRYKS NTYSLQDFKD NAKKILQVSI PIAIGALSMP VLNLVDSVTI PHMLHES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [263-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTIQEQFGI YSRGFAFTQL IVVFASAMVF PLIPLLTAAL TKKDIALAKQ TIERTNDLAH  60
   61 VLTTPITIWL MALTIPLNVG LFTDAKGSGM LAILIGSSYF TSLMVLSIGI LQGINRSKQA 120
  121 AWIVVGASFV KVILNIVLVS QFGITGAAYS TLIIYIMICI VNYIYIRKEL AYSIHMGRFF 180
  181 AVIGVSSIVG IGLYFTSTFI NVVDSRIITI IYSGLAFCVA LFIYGICALK LNWISKKQIP 240
  241 FLRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits