YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177735, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177735, gi|....

Description	E-value	Query Range	Subject Range
gi\|58337744, gi\|... - gi\|58337744\|ref\|YP_194329.1\| PTS enzyme IIABC [Lactobacillus acidophilus NCFM], gi\|58255061\|gb\|AAV43... gi\|227904393, gi... - gi\|227904393\|ref\|ZP_04022198.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Lactobacil...	2.0E-77	[3..445]	[103..548]
gi\|163860935, gi... - gi\|89207743\|ref\|ZP_01186276.1\| Phosphotransferase system PTS, EIIB:Phosphotransferase system, EIIC [...	8.0E-77	[1..454]	[1..454]
gi\|10176198, gi\|... - gi\|15616136\|ref\|NP_244441.1\| PTS system, sucrose phosphotransferase enzyme II, BC component [Bacillu... gi\|25287875 - pir\|\|F84096 PTS system, sucrose phosphotransferase enzyme II, BC component BH3574 [imported] - Bacil...	2.0E-76	[1..454]	[1..452]
gi\|42519186, gi\|... - gi\|42519186\|ref\|NP_965116.1\| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, b...	3.0E-76	[3..445]	[100..545]
gi\|47558132, gi\|... - gi\|47564759\|ref\|ZP_00235803.1\| PTS system, IIBC components [Bacillus cereus G9241], gi\|47558132\|gb\|E...	7.0E-76	[1..454]	[1..454]
gi\|42779990, gi\|... - gi\|42779990\|ref\|NP_977237.1\| PTS system, sucrose-specific IIBC component [Bacillus cereus ATCC 10987...	8.0E-76	[1..454]	[1..454]
gi\|49480185, gi\|... - gi\|49480185\|ref\|YP_035077.1\| PTS system, sucrose-specific IIBC component [Bacillus thuringiensis ser...	8.0E-76	[1..454]	[1..454]
gi\|116103681, gi... - gi\|48870832\|ref\|ZP_00323550.1\| COG1263: Phosphotransferase system IIC components, glucose/maltose/N-...	1.0E-75	[4..451]	[174..643]
gi\|52144505, gi\|... - gi\|52144505\|ref\|YP_082323.1\| PTS system, sucrose-specific IIBC component [Bacillus cereus E33L], gi\|...	3.0E-75	[1..454]	[1..454]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEERMAKE ISEQLGGVKN IRGIAHCMTR LRLTLHDESK VNMDLLKKVE GVMGVIEDET  60
   61 LQVVVGPGTV NKVAAEMEGL TGLRIGEVAD Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [92-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLEDLGQEMK SEIKKKNNTP VKNFLRKIGS IFIPLIPGLV ASGIINGVAN FAKNAGADPN  60
   61 ATWLQMLLLI GGGIFTFLGI LVGWNTAKEF GGTPVLGAIA GILIFNPAMA NVKLFGEALV 120
  121 PGRGGLFAVI FAAWLMVVVE RQVRKAVPNA VDIIITPLIT VLVVSIVTML AIQPVAGFLS 180
  181 EGITNGINGI LN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGGAFAGAVL AGTFLPLVMV GLHHGLTPIH MEFINQTHVT PLLPVLAMAG AGQVGAAIAI  60
   61 FVKTKNKRLR NVIKGALPVG FLGIGEPLLY GVTLPLGKPF LTACLGAAVG GAFQAVMKTA 120
  121 ALGIGVSGLS LIPLIADNKY LLYFLGLVVA YTFGFIFTYF FGFKEEMAEN I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: