YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260933, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260933, gi|....

Description	E-value	Query Range	Subject Range
gi\|228899467, gi... - gi\|228899467\|ref\|ZP_04063724.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|74490061, gi\|... - gi\|75762452\|ref\|ZP_00742318.1\| PTS system, diacetylchitobiose-specific IIA component [Bacillus thuri...	1.0E-30	[1..104]	[6..109]
gi\|163860904, gi... - gi\|89208353\|ref\|ZP_01186864.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni...	2.0E-30	[1..104]	[1..104]
gi\|42779958, gi\|... - gi\|42779958\|ref\|NP_977205.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109...	2.0E-30	[1..104]	[1..104]
gi\|218902002, gi... - gi\|218902002\|ref\|YP_002449836.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|196046689, gi... - gi\|196046689\|ref\|ZP_03113912.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|196036589, gi... - gi\|196036589\|ref\|ZP_03103983.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus W], g... gi\|49480294, gi\|... - gi\|49480294\|ref\|YP_035045.1\| PTS system, cellobiose-specific IIA component [Bacillus thuringiensis s...	6.0E-30	[1..106]	[1..106]
gi\|229149126, gi... - gi\|229149126\|ref\|ZP_04277367.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228657212, gi... - gi\|229126220\|ref\|ZP_04255238.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|229108393, gi... - gi\|229108393\|ref\|ZP_04238010.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228705213, gi... - gi\|229078093\|ref\|ZP_04210689.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|206737176, gi... - gi\|206968256\|ref\|ZP_03229212.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH113... gi\|29894508, gi\|... - gi\|30018966\|ref\|NP_830597.1\| PTS system, diacetylchitobiose-specific IIA component [Bacillus cereus ... gi\|229068465, gi... - gi\|229068465\|ref\|ZP_04201766.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228726751, gi... - gi\|229042658\|ref\|ZP_04190399.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228951284, gi... - gi\|228951284\|ref\|ZP_04113394.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu...	6.0E-30	[1..104]	[1..104]
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	9.0E-30	[3..101]	[6..104]
gi\|52144536, gi\|... - gi\|52144536\|ref\|YP_082291.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus E33L], g...	9.0E-30	[1..106]	[1..106]
gi\|48869880, gi\|... - gi\|48869880\|ref\|ZP_00322617.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	1.0E-29	[3..103]	[7..107]
gi\|47558097, gi\|... - gi\|47564724\|ref\|ZP_00235768.1\| PTS system, IIA component [Bacillus cereus G9241], gi\|47558097\|gb\|EAL...	1.0E-29	[1..104]	[1..104]
gi\|20515322, gi\|... - gi\|20806853\|ref\|NP_622024.1\| phosphotransferase system cellobiose-specific component IIA [Thermoanae... gi\|20806853 - gi\|20806853\|ref\|NP_622024.1\| Phosphotransferase system cellobiose-specific component IIA [Thermoanae...	2.0E-29	[1..100]	[1..100]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADMQTPFAL ILHGGNARSI ALEAIAFARQ GDFENASEKM TLASEEISAA HRIQTDLIQE  60
   61 EARGNHAEIS LLLVHAQDHL MNAITVKELA EEFITLHKRM EEKVIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.00429001244066	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.03872487639957	bayes_pls_golite062009
transporter activity	1.32957030120524	bayes_pls_golite062009
transmembrane transporter activity	1.20211801626802	bayes_pls_golite062009
active transmembrane transporter activity	1.08511657750399	bayes_pls_golite062009
substrate-specific transporter activity	0.93495816074069	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.81702015470704	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.34582307123923	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0202700968382801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: