YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260919, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	554 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260919, gi|....

Description	E-value	Query Range	Subject Range
gi\|218901986, gi... - gi\|218901986\|ref\|YP_002449820.1\| pyridine nucleotide-disulfide oxidoreductase, class I [Bacillus cer... gi\|49331863, gi\|... - gi\|49480307\|ref\|YP_035029.1\| NADH dehydrogenase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|228662996, gi... - gi\|229120411\|ref\|ZP_04249658.1\| Pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus 95/82... gi\|228925950, gi... - gi\|228925950\|ref\|ZP_04089031.1\| Pyridine nucleotide-disulphide oxidoreductase [Bacillus thuringiensi...	3.0E-95	[1..554]	[1..554]
gi\|89159869, gi\|... - gi\|89210607\|ref\|ZP_01188995.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:SirA-like...	1.0E-92	[1..546]	[1..546]
gi\|69245780, gi\|... - gi\|69245780\|ref\|ZP_00603623.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:Rhodanese... gi\|48825432 - ref\|ZP_00286681.1\| COG0446: Uncharacterized NAD(FAD)-dependent dehydrogenases [Enterococcus faecium]	5.0E-92	[4..554]	[2..548]
gi\|106894803, gi... - gi\|158319931\|ref\|YP_001512438.1\| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Alkali...	2.0E-90	[1..545]	[1..544]
gi\|82400746, gi\|... - gi\|82501257\|ref\|ZP_00886614.1\| Rhodanese-like [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82...	8.0E-90	[4..542]	[2..542]
gi\|150017788, gi... - gi\|82748583\|ref\|ZP_00911064.1\| Rhodanese-like [Clostridium beijerincki NCIMB 8052], gi\|82723543\|gb\|E...	1.0E-89	[1..544]	[1..543]
gi\|47564707, gi\|... - gi\|47564707\|ref\|ZP_00235751.1\| coenzyme A disulfide reductase [Bacillus cereus G9241], gi\|47558080\|g...	2.0E-89	[20..554]	[20..554]
gi\|30018950, gi\|... - gi\|30018950\|ref\|NP_830581.1\| NADH dehydrogenase [Bacillus cereus ATCC 14579], gi\|29894492\|gb\|AAP0778...	6.0E-89	[20..554]	[20..554]
gi\|227176456, gi... - gi\|227554415\|ref\|ZP_03984462.1\| possible CoA-disulfide reductase [Enterococcus faecalis HH22], gi\|22... gi\|29377452, gi\|... - gi\|29377452\|ref\|NP_816606.1\| coenzyme A disulfide reductase [Enterococcus faecalis V583], gi\|2934491...	1.0E-88	[4..552]	[2..546]
gi\|18309716, gi\|... - gi\|18309716\|ref\|NP_561650.1\| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridi...	2.0E-88	[1..543]	[1..542]

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Predicted Domain #1

Region A:
Residues: [1-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKIVVVGG VAGGASVAAR LRRLSEEDEI IMVERGEYIS FANCGLPYYI GGVITERQKL  60
   61 LVQTVERMSK RFNLDIRVLS EVVKINKEEK TITIKNVTTN ETYNEAYDVL ILSPGAKPIV 120
  121 PSIPGIEEAK ALFTLRNVPD TDRIKAYIDE KKPRHATVIG GGFIGVEMVE NLRERGIEVT 180
  181 LVEMANQVMP PIDYEMAAYV HEHMKNHDVE LVFEDGVDAL EENGAVVRLK SGSVIQTDML 240
  241 ILAIGVQPES SLAKGAGLAL GVRGTIKVNE KFQTSDPHIY AIGDAIEVKD FVTETETMIP 300
  301 LAWPANRQGR MLADIIHGHT DSLYKGTLGT SVAKVFDLTV ATTGLNEKIL KRLNIPYEVV 360
  361 HVQANSHAGY YPNATPVLIK LIFNKDSGKI YGAQTLGRDG VDKRMDVIAT AIKANLTVLD 420
  421 LPDLELSYAP PYSSAKDPVN MVGYAASNIV D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1yqzA
Description:	No description for 1yqzA was found.

Predicted Domain #2

Region A:
Residues: [452-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFVDTVQWHE IDRIVENGGY LIDVREPNEL KQGMIKGSIN IPLDELRDRL EEVPVDKDIY  60
   61 ITCQLGMRGY VAARMLMEKG YKVKNVDGGF KLYGTVLPER IVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	1gmxA
Description:	Sulfurtransferase GlpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits