YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254350, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254350, gi|....

Description	E-value	Query Range	Subject Range
gi\|32468837, gi\|... - gi\|50812303\|ref\|NP_391684.2\| phosphotransferase system (PTS) sucrose-specific enzyme IIBC component ... PTSBC_BACSU, PTS... - (P05306) PTS system, sucrose-specific IIBC component (EIIBC-Scr) (Sucrose-permease IIBC component) (...	2.0E-78	[1..454]	[1..452]
gi\|10172909, gi\|... - gi\|15612859\|ref\|NP_241162.1\| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus ... gi\|25287889 - pir\|\|H83686 PTS system, beta-glucoside-specific enzyme II, ABC component BH0296 [imported] - Bacillu...	2.0E-76	[1..457]	[1..451]
gi\|58336738, gi\|... - gi\|58336738\|ref\|YP_193323.1\| sucrose PTS II ABC [Lactobacillus acidophilus NCFM], gi\|58254055\|gb\|AAV... gi\|33149353 - gi\|33149353\|gb\|AAO38866.1\| sucrose PTS transporter [Lactobacillus acidophilus]	1.0E-75	[1..456]	[1..460]
gi\|15893714, gi\|... - gi\|7025341\|gb\|AAF35839.1\|AF205034_2 ScrA [Clostridium acetobutylicum], gi\|15893714\|ref\|NP_347063.1\| ... gi\|7025341, gi\|2... - gi\|7025341\|gb\|AAF35839.1\| ScrA [Clostridium acetobutylicum], pir\|\|H96951 fusion, PTS system, beta-gl...	3.0E-75	[1..458]	[1..455]
gi\|143489, gi\|41... - pir\|\|A39938 phosphotransferase system enzyme II (EC 2.7.1.69), sucrose-specific (sacP) - Bacillus su... gi\|413973\|emb\|CA... - ipa-49d sacP [Bacillus subtilis]	1.0E-73	[1..454]	[1..451]
gi\|52144365, gi\|... - gi\|52144365\|ref\|YP_082463.1\| PTS system, beta-glucoside-specific enzyme II, ABC component [Bacillus ...	2.0E-73	[1..458]	[1..462]
gi\|90961054, gi\|... - gi\|90961054\|ref\|YP_534970.1\| PTS system, sucrose-specific IIABC component [Lactobacillus salivarius ...	4.0E-73	[1..455]	[1..458]
gi\|172058915, gi... - gi\|68056025\|ref\|ZP_00540161.1\| PTS system, sucrose-specific IIBC component:PTS system, glucose-like ...	4.0E-73	[1..457]	[1..459]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMKQIATQV LQNIGGKENI MRATHCATRL RLVLKDETKI NASEIENIDE VKGAFATTEQ  60
   61 YQIIFGTGIV NKVYDEFSKL IG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [83-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAELDSTRSN DIPKKKMNPI ARLAKTLSNI FVPIIPAIVA SGLLMGLLGM LKAFKLVPGD  60
   61 HSLIQLLDMF SSAAFIILPI LIGVSAAKEF GGNIFLGAVV GGILTHPSLT NPWTLSNAKP 120
  121 TVLHFLGMDI DMIGYQGTVL PILLCVYVMS TIEKELRKRV PNSLDLLVTP FLTIIITGFL 180
  181 S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [264-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIIIGPIGYK IGDGITYLLN TIYQFAGPVA GLIFGGLYST IVLTGLHHSF HAIEAGLLAN  60
   61 KDIGVNFLLP IWSMANVAQG GATLAVYFKT KNKKTKEIAI PAAASAFLGI TEPAIFGVNL 120
  121 KLGKPFIAAA IGGAIGGAYV VWMQVAANAY GLTGIPMLTI VAPLGMMNMI HYIIGFAIAV 180
  181 TTAFVATFIL YKESK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: