YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260887, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260887, gi|....

Description	E-value	Query Range	Subject Range
gi\|83749461, gi\|... - gi\|83749461\|ref\|ZP_00946452.1\| Potassium-transporting ATPase A chain [Ralstonia solanacearum UW551],...	0.0	[4..553]	[6..589]
ATKA_RALSO - Potassium-transporting ATPase A chain OS=Ralstonia solanacearum GN=kdpA PE=3 SV=1 KDPA_RALSO - Potassium-transporting ATPase potassium-binding subunit OS=Ralstonia solanacearum (strain GMI1000) G...	0.0	[4..553]	[6..589]
ATKA_RHILO - Potassium-transporting ATPase A chain OS=Rhizobium loti GN=kdpA PE=3 SV=1 KDPA_RHILO - Potassium-transporting ATPase potassium-binding subunit OS=Rhizobium loti (strain MAFF303099) GN=kdp...	0.0	[3..554]	[6..561]
KDPA_DECAR - Potassium-transporting ATPase potassium-binding subunit OS=Dechloromonas aromatica (strain RCB) GN=k...	0.0	[3..554]	[6..588]
ATKA_BRAJA - Potassium-transporting ATPase A chain OS=Bradyrhizobium japonicum GN=kdpA PE=3 SV=1 KDPA_BRADU - Potassium-transporting ATPase potassium-binding subunit OS=Bradyrhizobium diazoefficiens (strain JCM...	0.0	[3..554]	[6..561]
KDPA_CHRVO - Potassium-transporting ATPase potassium-binding subunit OS=Chromobacterium violaceum (strain ATCC 12... ATKA_CHRVO - Potassium-transporting ATPase A chain OS=Chromobacterium violaceum GN=kdpA PE=3 SV=1	0.0	[4..554]	[7..598]
gi\|115260230, gi... - gi\|116255582\|ref\|YP_771415.1\| potassium-transporting ATPase subunit A [Rhizobium leguminosarum bv. v...	0.0	[3..554]	[6..561]
gi\|90426021, gi\|... - gi\|90426021\|ref\|YP_534391.1\| potassium-transporting ATPase subunit A [Rhodopseudomonas palustris Bis...	0.0	[3..554]	[6..561]
gi\|78513738, gi\|... - gi\|78698208\|ref\|ZP_00862711.1\| K+ transporting ATPase, A subunit [Bradyrhizobium sp. BTAi1], gi\|7851...	0.0	[3..554]	[6..561]
gi\|25290626, gi\|... - pir\|\|AB3023 potassium-transporting ATPase A chain kdpA [imported] - Agrobacterium tumefaciens (strai... KDPA_AGRFC - Potassium-transporting ATPase potassium-binding subunit OS=Agrobacterium fabrum (strain C58 / ATCC 3...	0.0	[3..554]	[6..561]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWVAVVITM LLFILVAKPT GIYLEKAFQG SKKLDKVFGP FEKLIFKITG VKEYNQTWKQ  60
   61 YALSLVLLNG FMIVVVYFIF RLQGVLPLNP AHIEGMEPTL AFNTAISFMA DTNLQH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSGENGLSYL SQLIGITFLM FAAPATTLAL VMAFIRGLAG KELGNFFIDF TRALTRVFLP  60
   61 IAFMAALVFV ALGVPQTLDG AVTAQTIDGA KQSILRGPVA SFVAIKELGN NGGGFFGANS 120
  121 THPFENPGQM SNILQMMLMM LLPTALPFTY GRMVGNKKQG RILFVSLFMV FLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [290-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFITITTSEL NGNPALNAMG IEHVQGSTEG KEVRFGTVFS SLYATVTTAA ETGAVNTMHD  60
   61 TLTPIGGLVP LVNMMLNTVY GGVGAGFVNI IMYAIIAVFI SGLMVGRTPE FLGKKIEGKE 120
  121 MKLIAVTILF HPLLILGFSA LALSTSLGTD AIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [443-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSGFHGLTQV VYEYTSSAAN NGSGFEGLGD NTPFWNITTG LVMFLGRYFS LITMLAVAAS  60
   61 LKEKTVVPET VGTFRTDNGL FGGIFIGTIV IVGALTFFPM LVLGPIAEFL TLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits