YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260819, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260819, gi|....

Description	E-value	Query Range	Subject Range
gi\|76583467, gi\|... - gi\|76818994\|ref\|YP_336949.1\| sugar ABC transporter, permease protein [Burkholderia pseudomallei 1710...	4.0E-68	[7..310]	[531..832]
gi\|71733898, gi\|... - gi\|71733898\|ref\|YP_274918.1\| ribose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. p...	9.0E-52	[2..310]	[318..624]
gi\|6714794, gi\|2... - gi\|6714794\|emb\|CAB66286.1\| bifunctional carbohydrate binding and transport protein. [Streptomyces co...	8.0E-49	[4..310]	[19..323]
gi\|29831861, gi\|... - gi\|29831861\|ref\|NP_826495.1\| D-ribose ABC transporter permease protein [Streptomyces avermitilis MA-...	2.0E-44	[5..310]	[19..322]
gi\|254223025, gi... - gi\|75824689\|ref\|ZP_00754136.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... tr\|D7HAT2\|D7HAT2... - Ribose ABC transporter permease OS=Vibrio cholerae RC385 GN=VCRC385_02451 PE=4 SV=1	1.0E-42	[4..310]	[25..333]
gi\|53987537, gi\|... - gi\|54020364\|ref\|YP_115660.1\| putative ribose ABC transporter [Mycoplasma hyopneumoniae 232], gi\|5398...	2.0E-42	[3..307]	[280..585]
gi\|75830918, gi\|... - gi\|75830918\|ref\|ZP_00760188.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229605177, gi... - gi\|229605177\|ref\|YP_002875881.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae ... gi\|229345403, gi... - gi\|229517367\|ref\|ZP_04406812.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae R... gi\|75815453 - gi\|75815453\|ref\|ZP_00745961.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229352947, gi... - gi\|229510502\|ref\|ZP_04399982.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae B... tr\|A0A023PTC2\|A0... - Uncharacterized protein OS=Vibrio cholerae PE=4 SV=1, Ribose ABC transporter permease protein OS=Vib... gi\|75824937, gi\|... - gi\|75824937\|ref\|ZP_00754373.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste... gi\|229357055, gi... - gi\|229506704\|ref\|ZP_04396213.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae B... gi\|227811755, gi... - gi\|227811755\|ref\|YP_002811765.1\| ribose ABC transporter, permease protein [Vibrio cholerae M66-2], g...	1.0E-41	[4..310]	[25..333]
gi\|229526243, gi... - gi\|229526243\|ref\|ZP_04415647.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae b... gi\|229340016, gi... - gi\|229522799\|ref\|ZP_04412213.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae T... gi\|229334251, gi... - gi\|229527889\|ref\|ZP_04417280.1\| ribose ABC transport system permease protein RbsC [Vibrio cholerae 1... tr\|A0A023PSC7\|A0... - Uncharacterized protein OS=Vibrio cholerae PE=4 SV=1 gi\|75820338, gi\|... - gi\|75820338\|ref\|ZP_00750388.1\| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport syste...	3.0E-41	[4..310]	[25..333]
gi\|11279048 - pir\|\|B82497 ribose ABC transporter, permease protein VCA0129 [imported] - Vibrio cholerae (strain N1... gi\|15600900, gi\|... - gi\|9657517\|gb\|AAF96043.1\| ribose ABC transporter, permease protein [Vibrio cholerae O1 biovar eltor ...	4.0E-41	[4..309]	[25..332]
gi\|37200771, gi\|... - gi\|37676230\|ref\|NP_936626.1\| ribose ABC transporter permease protein [Vibrio vulnificus YJ016], gi\|3...	9.0E-41	[4..310]	[20..328]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGNVLQQ LGSLIGLALI IVVITALNPA FIEIPNLFNI LRQVSINALI AFGMTFVILT  60
   61 GGIDLSVGSI LALSSALVAG MMASGMDPFL AMAVGLLAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVMGIVNGII IAKGKVAPFI ATLATMTIFR GLTLVYMDGR PITGLGDHLM FQMFGRGYFL  60
   61 GIPVPAVTMM IAFAVLYFIL KKTTFGRRTF AIGGNEEAAA LSGINVTKIK VMIYGLSGIL 120
  121 AAFAGIVLTS RLDSAQPTAG TSYELDAIAA VVLGGTSLSG GRGWIVGTFI GVLIIGVLNN 180
  181 GLNLLGVSSF FQQVVKGLVI LLAVLIDRRK EA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits