YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49183646, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49183646, gi|....

Description	E-value	Query Range	Subject Range
gi\|83368517, gi\|... - gi\|83368517\|ref\|ZP_00913380.1\| similar to Sulfate permease and related transporters (MFS superfamily...	1.0E-80	[2..480]	[271..754]
gi\|2208982 - gi\|2208982\|emb\|CAA73749.1\| sulfate permease [Yersinia enterocolitica]	4.0E-78	[1..482]	[2..484]
gi\|90576610, gi\|... - gi\|90576610\|ref\|YP_534852.1\| putative sulfate permease protein [Pseudomonas putida], gi\|90567963\|dbj...	5.0E-78	[1..480]	[1..486]
gi\|25520994 - pir\|\|G97500 sulfate permease (AF157801) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi\|15156194, gi\|... - gi\|15888494\|ref\|NP_354175.1\| hypothetical protein AGR_C_2140 [Agrobacterium tumefaciens str. C58], g...	6.0E-78	[2..483]	[115..599]
gi\|226425961, gi... - gi\|226810048\|ref\|YP_002791743.1\| SfpA [Enterobacter cloacae], gi\|226807734\|ref\|YP_002791430.1\| SfpA ... gi\|190410317, gi... - gi\|190410317\|ref\|YP_001965820.1\| sfpA [Klebsiella pneumoniae], gi\|146151111\|gb\|ABQ02877.1\| sfpA [Kle... gi\|38347994, gi\|... - gi\|7636050\|emb\|CAB88408.1\| putative sulfate permease protein [Serratia marcescens], gi\|38347994\|ref\|...	6.0E-78	[1..482]	[2..484]
gi\|11279064, gi\|... - gi\|3068717\|gb\|AAC14417.1\| unknown [Arabidopsis thaliana], pir\|\|T51161 hypothetical protein [imported...	2.0E-77	[1..477]	[115..662]
gi\|13625941, gi\|... - gi\|162464404\|ref\|NP_001105050.1\| sulfate transporter ST1 [Zea mays], gi\|13625941\|gb\|AAK35215.1\|AF355...	6.0E-77	[1..478]	[83..632]
gi\|88703640, gi\|... - gi\|88703640\|ref\|ZP_01101356.1\| sulfate permease family protein [gamma proteobacterium KT 71], gi\|887...	1.0E-76	[1..479]	[1..482]
gi\|114537210, gi... - gi\|114707329\|ref\|ZP_01440226.1\| antisigma-factor antagonist, STAS [Fulvimarina pelagi HTCC2506], gi\|...	1.0E-76	[3..482]	[57..539]
gi\|112774558 - gi\|112774558\|gb\|ABI20727.1\| sulfate transporter [Delftia sp. AN3]	2.0E-76	[1..479]	[1..482]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQTIKNDWF SNVKGDVLSG IVVALALIPE AIAFSVIAGV DPTVGLYAAF CIAVTISFVG  60
   61 GRTGMISAAT GAMALLMVTL VKDHGLQYLF ATTILTGIVQ IIFGVFKLSS FMKFVPKSVM 120
  121 SGFLNALGIL VFTAQLPQLK NAT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [144-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WQMYALVALG LAIIYVFPRI TTAVPSTLIA IIIVTSIALM SGLQLKTVGD MGSLPKELPF  60
   61 FSIPDVPFTL ETLGIILPYA VMLAIIGLLE SLLTASVLDD MTHTESNKHK EARGQGIANI 120
  121 VAGFFGGMAG CAMIGQSVIN IKSGGRGRLS TFVAGGFLIV LLFVLGDYVV HIPMAALVAV 180
  181 MIMVSIGTFD WNSVATIHKV PKGNAFVMIV TVVVVLITHN LGLGVVIGTV ISAVLFAFNM 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [384-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKIHVKHLYI ENKKIYEIHG QLFFASTADF INNFSFNEDV KEIEMNFTHA HVWDDSAVAS  60
   61 IDKVIMKYEQ SGVKVSITGL NERSAKLVTN LATYNKRIAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1auzA
Description:	SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.97991551312897	bayes_pls_golite062009
protein binding	1.39062728142841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: