YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254241, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254241, gi|....

Description	E-value	Query Range	Subject Range
gi\|206743632, gi... - gi\|206978160\|ref\|ZP_03239042.1\| sodium/alanine symporter family protein [Bacillus cereus H3081.97], ... gi\|42779784, gi\|... - gi\|42779784\|ref\|NP_977031.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	2.0E-98	[1..486]	[1..486]
gi\|51978142, gi\|... - gi\|52144673\|ref\|YP_082155.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	2.0E-98	[1..486]	[1..486]
gi\|49480224, gi\|... - gi\|49480224\|ref\|YP_034896.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	2.0E-98	[1..486]	[1..486]
gi\|47568089, gi\|... - gi\|47568089\|ref\|ZP_00238794.1\| sodium:alanine symporter family protein [Bacillus cereus G9241], gi\|4...	1.0E-97	[1..486]	[2..487]
gi\|29894365, gi\|... - gi\|30018823\|ref\|NP_830454.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1... gi\|229126069, gi... - gi\|229126069\|ref\|ZP_04255091.1\| sodium/alanine symporter [Bacillus cereus BDRD-Cer4], gi\|228657391\|g...	1.0E-97	[1..486]	[2..487]
gi\|89150470, gi\|... - gi\|89201554\|ref\|ZP_01180293.1\| Sodium:alanine symporter [Bacillus cereus subsp. cytotoxis NVH 391-98...	2.0E-97	[1..486]	[1..486]
gi\|228860354, gi... - gi\|228899323\|ref\|ZP_04063586.1\| sodium/alanine symporter [Bacillus thuringiensis IBL 4222], gi\|22886... gi\|74493121, gi\|... - gi\|75759409\|ref\|ZP_00739504.1\| Sodium/proton-dependent alanine carrier protein [Bacillus thuringiens...	3.0E-97	[1..486]	[2..487]
gi\|163860758, gi... - gi\|89206157\|ref\|ZP_01184719.1\| Sodium:alanine symporter [Bacillus weihenstephanensis KBAB4], gi\|8915... gi\|229131581, gi... - gi\|229131581\|ref\|ZP_04260464.1\| sodium/alanine symporter [Bacillus cereus BDRD-ST196], gi\|228651872\|...	2.0E-94	[1..486]	[1..486]
gi\|117919932, gi... - gi\|78686912\|ref\|ZP_00851672.1\| Sodium:alanine symporter [Shewanella sp. ANA-3], gi\|78505310\|gb\|EAP18...	2.0E-91	[1..476]	[1..475]
gi\|24374585, gi\|... - gi\|24374585\|ref\|NP_718628.1\| sodium:alanine symporter family protein [Shewanella oneidensis MR-1], g... SO3063 - sodium:alanine symporter family protein	3.0E-91	[1..476]	[1..475]

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Predicted Domain #1

Region A:
Residues: [1-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAFVNWLNN IVWSPALVYL CLGVGLYFSI RTRFLQVRHV GEMVKLTFQG EKSEAGVSSF  60
   61 QALALSLSGR VGTGNIAGVA TAVAFGGPGA VFWMWAVAFL GAGSAYVEST LAQIYKTKHQ 120
  121 GQFRGGPAYY IEKGLGVKWY ALVFVAATIL ATGLLLPGVQ ANSIAVSLET AFGINTTLSG 180
  181 ALLVVVLALI IFGGVKRIVN VAQVVVPFMA VGYILVACVI VAMNIEKLPE AFMLIIRSAF 240
  241 ALEAAFGGII GLAISWGVKR GIYSNEAGQG TGPHAAAAAE VSHPAKQGLV QAFSVYIDTL 300
  301 FVCSATAFMM IITGMYNVFD ASGKNFIVNK LNGAQPGPGY TQAAVESVFP GFGNGFVAIS 360
  361 LLFFAFTTIM AYYYIAETNI AYLNRDKDRP WLSMVLKFVF LGAVFYGCIK TAATAWALGD 420
  421 IGVEIMAWVN IIAILLLQKP ALVALKDYEK QKKEGKDPVF DPGPLGIKNA DFWEHEYGKG 480
  481 KKEEVS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits