YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254234, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254234, gi|....

Description	E-value	Query Range	Subject Range
gi\|218537661, gi... - gi\|218901825\|ref\|YP_002449659.1\| PTS system, trehalose-specific IIBC component [Bacillus cereus AH82... gi\|196035726, gi... - gi\|196035726\|ref\|ZP_03103129.1\| PTS system, trehalose-specific IIBC component [Bacillus cereus W], g... gi\|49480220, gi\|... - gi\|49480220\|ref\|YP_034889.1\| protein-N(pi)-phosphohistidine-sugar phosphotransferase (PTS system, tr... gi\|228932058, gi... - gi\|228932058\|ref\|ZP_04094950.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus thur... gi\|228833834, gi... - gi\|228925819\|ref\|ZP_04088903.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus thur...	1.0E-81	[1..475]	[1..475]
gi\|47568077, gi\|... - gi\|47568077\|ref\|ZP_00238782.1\| PTS system, trehalose-specific IIBC component [Bacillus cereus G9241]... gi\|42779777, gi\|... - gi\|42779777\|ref\|NP_977024.1\| PTS system, trehalose-specific IIBC component [Bacillus cereus ATCC 109...	1.0E-81	[1..475]	[1..475]
gi\|52144680, gi\|... - gi\|52144680\|ref\|YP_082148.1\| protein-N(pi)-phosphohistidine-sugar phosphotransferase (PTS system, tr...	6.0E-81	[1..475]	[1..475]
gi\|75759403, gi\|... - gi\|75759403\|ref\|ZP_00739498.1\| PTS system, trehalose-specific IIBC component [Bacillus thuringiensis...	7.0E-81	[1..475]	[1..475]
gi\|29894358, gi\|... - gi\|30018816\|ref\|NP_830447.1\| PTS system, trehalose-specific IIBC component [Bacillus cereus ATCC 145... gi\|228640162, gi... - gi\|229143355\|ref\|ZP_04271786.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus cere... gi\|229126062, gi... - gi\|229126062\|ref\|ZP_04255084.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus cere... gi\|228957050, gi... - gi\|228957050\|ref\|ZP_04118825.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus thur...	2.0E-80	[1..475]	[1..475]
gi\|70732258, gi\|... - gi\|70732258\|ref\|YP_262014.1\| PTS system, trehalose-specific IIBC component [Pseudomonas fluorescens ...	2.0E-79	[1..465]	[1..465]
gi\|11127690 - gi\|11127690\|gb\|AAG31031.1\|AF229829_2 TreP [Pseudomonas fluorescens]	3.0E-79	[1..465]	[1..465]
gi\|89155874, gi\|... - gi\|89206150\|ref\|ZP_01184712.1\| PTS system, trehalose-specific IIBC component:PTS system, glucose-lik... gi\|229131573, gi... - gi\|229131573\|ref\|ZP_04260457.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus cere... gi\|228617881, gi... - gi\|229165574\|ref\|ZP_04293349.1\| Protein-N p-phosphohistidine-sugar phosphotransferase [Bacillus cere...	3.0E-79	[1..475]	[1..475]
gi\|58336738, gi\|... - gi\|58336738\|ref\|YP_193323.1\| sucrose PTS II ABC [Lactobacillus acidophilus NCFM], gi\|58254055\|gb\|AAV... gi\|33149353 - gi\|33149353\|gb\|AAO38866.1\| sucrose PTS transporter [Lactobacillus acidophilus]	6.0E-78	[4..475]	[2..464]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDYRKTAE EVLQYIGGKD NIEQAAHCVT RLRIALKDES KIDNDKLQSV SLVKGAFHNA  60
   61 GVFQIVIGPG DVDRVYAELI TLAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2r4qA
Description:	No description for 2r4qA was found.

Predicted Domain #2

Region A:
Residues: [85-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEATVADVK DSGNQKLNPA QKFVKVFSDV FMPILPAIVT AGLLMGINNL LGAKDLFFDG  60
   61 KNLLDVYPNL SGLWDLINMM ANTAFVFLPA LVGWSATKRF GGSPILGIVM GLMLVHPALL 120
  121 NAWDYGKAAT GLDGQKIEYF NILGLFQIEK VGYQGQILPV LVAAFVLSKV EIFLKKHVPN 180
  181 AIQLLVVPIT TIVVTGVLAL GII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [288-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVTRHIGDL LTAGLVGVYE TVPVVGAVLF GALYAPLVIT GMHHMFIAID LQLIAQHGGT  60
   61 FIWPMIALSN IAQGSAALAM FWISKNQNDK SMASTSAISA YFGITEPAMF GVNLRNKFPF 120
  121 YAAIIGSAVA AIFITLNGVL APAIGIGGLP AFISIIPKSI PMFIVGMVIA VVIPFTLTWL 180
  181 FAKRVKQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits