YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260779, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	509 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260779, gi|....

Description	E-value	Query Range	Subject Range
gi\|51978156, gi\|... - gi\|52144687\|ref\|YP_082142.1\| cardiolipin synthetase [Bacillus cereus E33L], gi\|51978156\|gb\|AAU19706....	0.0	[1..509]	[1..509]
gi\|229120274, gi... - gi\|229120274\|ref\|ZP_04249525.1\| Cardiolipin synthetase 1 [Bacillus cereus 95/8201], gi\|228663315\|gb\|... gi\|49331770, gi\|... - gi\|49480214\|ref\|YP_034883.1\| cardiolipin synthetase [Bacillus thuringiensis serovar konkukian str. 9...	0.0	[1..509]	[1..509]
gi\|42735689, gi\|... - gi\|42779772\|ref\|NP_977019.1\| cardiolipin synthetase [Bacillus cereus ATCC 10987], gi\|42735689\|gb\|AAS...	0.0	[1..509]	[1..509]
gi\|47568071, gi\|... - gi\|47568071\|ref\|ZP_00238776.1\| cardiolipin synthetase [Bacillus cereus G9241], gi\|47555225\|gb\|EAL135...	0.0	[1..509]	[1..509]
gi\|163860746, gi... - gi\|89206145\|ref\|ZP_01184707.1\| Phospholipase D/Transphosphatidylase [Bacillus weihenstephanensis KBA...	0.0	[1..509]	[1..509]
gi\|228640157, gi... - gi\|229143350\|ref\|ZP_04271781.1\| Cardiolipin synthetase 1 [Bacillus cereus BDRD-ST24], gi\|228640157\|g... CLS1_BACCR - Cardiolipin synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM... gi\|229126057, gi... - gi\|229126057\|ref\|ZP_04255079.1\| Cardiolipin synthetase 1 [Bacillus cereus BDRD-Cer4], gi\|228657379\|g... gi\|218161811, gi... - gi\|218233854\|ref\|YP_002365422.1\| cardiolipin synthetase [Bacillus cereus B4264], gi\|218161811\|gb\|ACK...	0.0	[1..509]	[1..509]
gi\|74493109, gi\|... - gi\|75759397\|ref\|ZP_00739492.1\| Cardiolipin synthetase [Bacillus thuringiensis serovar israelensis AT... gi\|218895681, gi... - gi\|218895681\|ref\|YP_002444092.1\| cardiolipin synthetase [Bacillus cereus G9842], gi\|218544531\|gb\|ACK... gi\|228795957, gi... - gi\|228963721\|ref\|ZP_04124863.1\| Cardiolipin synthetase 1 [Bacillus thuringiensis serovar sotto str. ...	0.0	[1..509]	[1..509]
gi\|68446672, gi\|... - gi\|70725948\|ref\|YP_252862.1\| hypothetical protein SH0947 [Staphylococcus haemolyticus JCSC1435], gi\|...	0.0	[14..509]	[1..494]
gi\|171990577, gi... - gi\|68056397\|ref\|ZP_00540519.1\| Phospholipase D/Transphosphatidylase [Exiguobacterium sibiricum 255-1...	0.0	[1..509]	[1..503]
CLS_OCEIH - Cardiolipin synthase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)... CLS_OCEIH - Cardiolipin synthase OS=Oceanobacillus iheyensis GN=cls PE=3 SV=1	0.0	[32..509]	[7..479]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPIIQLLL IFTIVSIVPF LLNTSYISLY TFVGVLWSIT IVGISFVIFI ENRSPQSTLA  60
   61 WFLVLALLPV VGVLLYSIFG RSRWRRKKHL HRSEEQRKLF REILEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-509]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRLELSLKVP LSERSVHLTE VVQKFGGGPA ADRTTTKLLT NGDQTFSEIL QAIEQAKHHI  60
   61 HIQYYIYKSD EIGTKVRDAL IKKAKDGVIV RFLYDGLGSN TLRRRFLQPM KEAGIEIVEF 120
  121 DPIFSAWLLE TVNYRNHRKI VIVDGEIGFT GGLNVGDEYL GRSKKFPVWR DSHLKVEGKA 180
  181 LYKLQAIFLE DWLYASSGLN TYSWDPFMNR QYFPGKEISN AEGAVQIVAS GPSSDDKSIR 240
  241 NTLLAVMGSA KKSIWIATPY FIPDQETLTL LRLSAISGID VRILYPGKSD SIISDQASQS 300
  301 YFTPLLKAGA SIYSYKDGFM HAKILLVDDK IATIGTANMD VRSFELNYEI ISVLYESETV 360
  361 HDIKRDFEDD FKHSTEIKWN AFQKRSIKKR ILESFMRLIS PLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1xdoA
Description:	Crystal Structure of Escherichia coli Polyphosphate Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.66280208217584	bayes_pls_golite062009
phosphoric diester hydrolase activity	1.06227220880142	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.27587835691419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: