YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254210, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	392 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254210, gi|....

Description	E-value	Query Range	Subject Range
gi\|50752715 - gi\|50752715\|ref\|XP_413724.1\| PREDICTED: similar to Na+-dependent purine-selective nucleoside transpo...	0.0	[2..391]	[785..1198]
S28A2_MOUSE - Sodium/nucleoside cotransporter 2 OS=Mus musculus GN=Slc28a2 PE=1 SV=2	0.0	[2..391]	[174..587]
SLC28A1 - solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	0.0	[2..391]	[177..590]
gi\|114658654 - gi\|114658654\|ref\|XP_510563.2\| PREDICTED: solute carrier family 28 (sodium-coupled nucleoside transpo...	0.0	[2..391]	[177..590]
gi\|15721849 - gi\|15721849\|gb\|AAK38150.1\| concentrative Na+ nucleoside cotransporter [Rattus norvegicus]	0.0	[2..391]	[173..586]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFITFFLGL IVVFFLAYIA SNNKKHIKFK PIFIMLLIQL ILTYLLLNTE IGLILIRVIS  60
   61 SLFTKLLEYA ADGINFVFGG LAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.004365
Match:	PF01773.11
Description:	No description for PF01773.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGEMPFFLTV LLPIVFISVL IGILQHFKIL PFFIHWIGYF LSKINGLGKL ESYNAIASAI  60
   61 VGQSEVFITV KKQLAQIPKH RLYTLCASAM STVSMSIVGA YMTMIEPKYV VTALV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.522879
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [199-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLFSGFIIV LIINPYDVKD DEDILEIKGE KQSFFEMLGE YILDGFRVAI VVGAMLIGFV  60
   61 ALISCINDLF LIIFGITFQQ LIGYVFAPIA FLIGVPSSEI VAAGSIMATK LVTNEFVAMM 120
  121 DLSKISNSLS PRTVGIISVF LVSFANFSSI GIISGAVKGL NEEQGNVVAR FGLKLLYGAT 180
  181 LVSILSAIIV SIML

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	105.136677
Match:	PF07662.4
Description:	No description for PF07662.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits