YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49177500, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49177500, gi|....

Description	E-value	Query Range	Subject Range
gi\|51978199, gi\|... - gi\|52144730\|ref\|YP_082098.1\| Na+/malate symporter [Bacillus cereus E33L], gi\|51978199\|gb\|AAU19749.1\|... gi\|228906325, gi... - gi\|228906325\|ref\|ZP_04070210.1\| Na(+)-malate symporter [Bacillus thuringiensis IBL 200], gi\|22885334...	0.0	[1..448]	[1..448]
gi\|49331724, gi\|... - gi\|49480168\|ref\|YP_034837.1\| Na+/malate symporter [Bacillus thuringiensis serovar konkukian str. 97-...	0.0	[1..448]	[1..448]
gi\|163938502, gi... - gi\|89205995\|ref\|ZP_01184559.1\| Citrate carrier protein [Bacillus weihenstephanensis KBAB4], gi\|89156...	0.0	[1..448]	[1..448]
gi\|42779719, gi\|... - gi\|42779719\|ref\|NP_976966.1\| citrate cation symporter family protein [Bacillus cereus ATCC 10987], g...	0.0	[7..448]	[1..442]
gi\|89201513, gi\|... - gi\|89201513\|ref\|ZP_01180252.1\| Citrate carrier protein [Bacillus cereus subsp. cytotoxis NVH 391-98]...	0.0	[7..448]	[1..442]
gi\|21398533, gi\|... - gi\|65318002\|ref\|ZP_00390961.1\| COG3493: Na+/citrate symporter [Bacillus anthracis str. A2012], ref\|N...	0.0	[1..427]	[1..427]
gi\|221315428 - gi\|221315428\|ref\|ZP_03597233.1\| Na+/malate symporter [Bacillus subtilis subsp. subtilis str. NCIB 36... MAEN_BACSU - Na(+)-malate symporter OS=Bacillus subtilis GN=maeN PE=3 SV=1 MAEN_BACSU - Na(+)-malate symporter OS=Bacillus subtilis (strain 168) GN=maeN PE=3 SV=1 gi\|221320344 - gi\|221320344\|ref\|ZP_03601638.1\| Na+/malate symporter [Bacillus subtilis subsp. subtilis str. JH642] gi\|221324628 - gi\|221324628\|ref\|ZP_03605922.1\| Na+/malate symporter [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[14..448]	[13..447]
gi\|76585406, gi\|... - gi\|76799237\|ref\|ZP_00781410.1\| L-malate permease [Streptococcus agalactiae 18RS21], gi\|76585406\|gb\|E... gi\|32442218 - gi\|32442218\|gb\|AAP82179.1\| L-malate permease [Streptococcus agalactiae] gi\|22538058, gi\|... - gi\|22538058\|ref\|NP_688909.1\| CCS family citrate carrier protein [Streptococcus agalactiae 2603V/R], ... gi\|24413488, gi\|... - gi\|25011946\|ref\|NP_736341.1\| hypothetical protein gbs1907 [Streptococcus agalactiae NEM316], gi\|2441... gi\|77159699, gi\|... - gi\|77414247\|ref\|ZP_00790408.1\| citrate carrier protein, CCS family [Streptococcus agalactiae 515], g...	0.0	[13..447]	[9..444]
gi\|77412195, gi\|... - gi\|77412195\|ref\|ZP_00788516.1\| citrate carrier protein, CCS family [Streptococcus agalactiae CJB111]...	0.0	[13..447]	[9..444]
gi\|77173530, gi\|... - gi\|77407885\|ref\|ZP_00784637.1\| citrate carrier protein, CCS family [Streptococcus agalactiae COH1], ...	0.0	[13..447]	[9..444]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQKNVEAV SFSEGNEVQR ESFASKIMNV KIGVIPLPLY VVLAAIIYGA SVYNKLPADM  60
   61 IGGFAVIMIM GIFLGDIGMR I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PILKNIGGPA ILSLFIPSLL VFFNWMNPAS MEAATMLMKK SNFLYLYISC LVVGSILGMN  60
   61 RKVLVQGFVR MFIPLVVGTL ASVAVGLLVG SLFGFEMKHT FFFIIVPIVS GGIGEGILPL 120
  121 SLAYSDILNE SSATFVSQLI PAAIIGNMFA IVSAGYMKRL GEKKPELSGN GVLVKTDNQA 180
  181 ELLKEQN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [269-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEKPIDFSLM GAGLLIACTF FIFGGFASKF IGIPGAIIMI FSAALVKYFK LMPAKMEQGA  60
   61 FHLYKFISKN LTWPLMVGLG LLYIPLKDVA AVLSVGYVVV CASVVLTMVA SGFLVGKVMK 120
  121 MYPVESAIVT GCHSGLGGTG DVAILSASNR MELMPFAQIS TRLGGAAMVV TATILLKMFS 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits