YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260647, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260647, gi|....

Description	E-value	Query Range	Subject Range
gi\|228627060, gi... - gi\|229156383\|ref\|ZP_04284477.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 4342], gi\|2... gi\|47552778, gi\|... - gi\|47570556\|ref\|ZP_00241179.1\| peptidase, U32 family [Bacillus cereus G9241], gi\|47552778\|gb\|EAL1120... gi\|228773827, gi... - gi\|228985898\|ref\|ZP_04146046.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar t...	9.0E-82	[1..265]	[1..268]
gi\|118478160, gi... - gi\|118478160\|ref\|YP_895311.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis str. Al Hak... gi\|229185021, gi... - gi\|229185021\|ref\|ZP_04312211.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus BGSC 6E1], gi\|22... gi\|228691538, gi... - gi\|229091810\|ref\|ZP_04223008.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus Rock3-42], gi\|22... gi\|52142709, gi\|... - gi\|52142709\|ref\|YP_084121.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus E33L], gi\|51976178\|... gi\|225864779, gi... - gi\|225864779\|ref\|YP_002750157.1\| putative glycosyl hydrolase, family 25 [Bacillus cereus 03BB102], g... gi\|196026009, gi... - gi\|196043700\|ref\|ZP_03110938.1\| putative glycosyl hydrolase, family 25 [Bacillus cereus 03BB108], gi...	1.0E-81	[1..265]	[1..268]
gi\|254722777 - gi\|254722777\|ref\|ZP_05184565.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A105... gi\|164715464, gi... - gi\|165868738\|ref\|ZP_02213398.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A048... gi\|254685369 - gi\|254685369\|ref\|ZP_05149229.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. CNEV... gi\|167532088, gi... - gi\|167631790\|ref\|ZP_02390117.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A044... gi\|229600075, gi... - gi\|229600075\|ref\|YP_002867082.1\| glycosyl hydrolase, family 25 [Bacillus anthracis str. A0248], gi\|2... gi\|167514143, gi... - gi\|167637594\|ref\|ZP_02395873.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A019... gi\|228946417, gi... - gi\|228946417\|ref\|ZP_04108738.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar m... gi\|170670845, gi... - gi\|170685485\|ref\|ZP_02876709.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A046... gi\|228927856, gi... - gi\|228927856\|ref\|ZP_04090904.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar p... gi\|170704648, gi... - gi\|170704648\|ref\|ZP_02895114.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A038... gi\|228915403, gi... - gi\|228915403\|ref\|ZP_04078996.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar p... gi\|177649702, gi... - gi\|177649702\|ref\|ZP_02932704.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. A017... gi\|227004061, gi... - gi\|227814382\|ref\|YP_002814391.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. CDC... gi\|190563620, gi... - gi\|190565593\|ref\|ZP_03018513.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis Tsiankovs... gi\|196032426, gi... - gi\|196032426\|ref\|ZP_03099840.1\| putative glycosyl hydrolase, family 25 [Bacillus cereus W], gi\|19599... gi\|218536717, gi... - gi\|218903929\|ref\|YP_002451763.1\| putative glycosyl hydrolase, family 25 [Bacillus cereus AH820], gi\|... gi\|49185622, gi\|... - gi\|49185622\|ref\|YP_028874.1\| glycosy hydrolase family protein [Bacillus anthracis str. Sterne], gi\|4... gi\|254760659 - gi\|254760659\|ref\|ZP_05212683.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. Aust... gi\|47503246, gi\|... - gi\|47528098\|ref\|YP_019447.1\| glycosy hydrolase family protein [Bacillus anthracis str. 'Ames Ancesto... gi\|254752139 - gi\|254752139\|ref\|ZP_05204176.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. Voll... gi\|30262777, gi\|... - gi\|30262777\|ref\|NP_845154.1\| glycosy hydrolase family protein [Bacillus anthracis str. Ames], gi\|302... gi\|254743002 - gi\|254743002\|ref\|ZP_05200687.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. Krug... gi\|21400701, gi\|... - gi\|65320098\|ref\|ZP_00393057.1\| COG3757: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Bacillus anthraci... gi\|254737825 - gi\|254737825\|ref\|ZP_05195528.1\| putative glycosyl hydrolase, family 25 [Bacillus anthracis str. West...	4.0E-81	[1..265]	[1..268]
gi\|49479119, gi\|... - gi\|49479119\|ref\|YP_036889.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar konk...	6.0E-81	[1..265]	[1..268]
gi\|152976640, gi... - gi\|89202390\|ref\|ZP_01181115.1\| Glycoside hydrolase, family 25 [Bacillus cereus subsp. cytotoxis NVH ...	1.0E-75	[1..262]	[1..268]
gi\|228655438, gi... - gi\|229128163\|ref\|ZP_04257145.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus BDRD-Cer4], gi\|2... gi\|29896494, gi\|... - gi\|30020941\|ref\|NP_832572.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 14579], gi\|298...	7.0E-75	[1..262]	[1..271]
gi\|42781905, gi\|... - gi\|42781905\|ref\|NP_979152.1\| U32 family peptidase [Bacillus cereus ATCC 10987], gi\|42737829\|gb\|AAS41...	4.0E-74	[1..262]	[1..271]
gi\|74487932, gi\|... - gi\|75764578\|ref\|ZP_00744033.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar is...	9.0E-72	[1..262]	[1..271]
gi\|163941491, gi... - gi\|89206929\|ref\|ZP_01185479.1\| Glycoside hydrolase, family 25 [Bacillus weihenstephanensis KBAB4], g...	7.0E-71	[1..263]	[1..265]

Back

Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHIIDISKW NGDINWSIAK QHIDFIIARV QDGSNYVDPL YKGYVQAMKQ HGIPFGNYAF  60
   61 CRFVSIADAK KEAQDFWNRG DKSATVWVAD VEVKTMNDMR AGTQAFIDEL YRLGAKKVGL 120
  121 YVGHHMYTPF GMANVKSDFV WIPRYGGNKP AYPCDIWQYT ETGNVPGIGK CDLNSLIGNK 180
  181 SLSWFTESAT QESVQAPTQN IIQSGAFSPY ETPDVTGALT SLKMTAKFIL KPDGLTYFIS 240
  241 DPTSDAQLNA MKEYLDRKGW WYEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	2nw0A
Description:	No description for 2nw0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits