YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260643, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260643, gi|....

Description	E-value	Query Range	Subject Range
gi\|456319 - gi\|456319\|emb\|CAA82772.1\| 74kDa protein [Bacteriophage FC1]	8.0E-87	[7..540]	[1..540]
gi\|227553079, gi... - gi\|227553079\|ref\|ZP_03983128.1\| structural protein [Enterococcus faecalis HH22], gi\|227177786\|gb\|EEI... gi\|227074033, gi... - gi\|227518551\|ref\|ZP_03948600.1\| structural protein [Enterococcus faecalis TX0104], gi\|227074033\|gb\|E... gi\|29375859, gi\|... - gi\|29375859\|ref\|NP_815013.1\| structural protein, putative [Enterococcus faecalis V583], gi\|29343321\|...	6.0E-82	[7..412]	[5..411]
gi\|15077567 - gi\|15077567\|gb\|AAK83249.1\|AF348743_1 host specificity protein [Streptococcus thermophilus bacterioph...	1.0E-78	[3..526]	[2..572]
gi\|9632434, gi\|4... - gi\|9632434\|ref\|NP_049406.1\| tail-host specificity protein [Streptococcus phage DT1], gi\|4530154\|gb\|A...	2.0E-78	[3..526]	[2..572]
gi\|15077561 - gi\|15077561\|gb\|AAK83246.1\|AF348740_1 host specificity protein [Streptococcus thermophilus bacterioph... gi\|15077565 - gi\|15077565\|gb\|AAK83248.1\|AF348742_1 host specificity protein [Streptococcus thermophilus bacterioph...	1.0E-75	[3..526]	[2..563]
gi\|15077563 - gi\|15077563\|gb\|AAK83247.1\|AF348741_1 host specificity protein [Streptococcus thermophilus bacterioph...	4.0E-74	[3..526]	[2..563]
gi\|15077569 - gi\|15077569\|gb\|AAK83250.1\|AF348744_1 host specificity protein [Streptococcus thermophilus bacterioph...	6.0E-72	[3..526]	[2..563]
gi\|25369989 - pir\|\|C84089 hypothetical protein BH3515 [imported] - Bacillus halodurans (strain C-125) gi\|10176139, gi\|... - gi\|15616077\|ref\|NP_244382.1\| hypothetical protein BH3515 [Bacillus halodurans C-125], gi\|10176139\|db...	3.0E-71	[6..357]	[42..375]
gi\|15077555 - gi\|15077555\|gb\|AAK83243.1\|AF348737_1 host specificity protein [Streptococcus thermophilus bacterioph... gi\|15077557 - gi\|15077557\|gb\|AAK83244.1\|AF348738_1 host specificity protein [Streptococcus thermophilus bacterioph...	3.0E-71	[3..430]	[2..473]
gi\|15077549 - gi\|15077549\|gb\|AAK83240.1\|AF348734_1 host specificity protein [Streptococcus thermophilus bacterioph...	3.0E-71	[3..430]	[2..473]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHIKLYDKQ LQLKAYLENA FKIKYSPPLN ELWTAGFSLP FTDPKREEIE TFDYVEIFDN  60
   61 GKRIGLFRIM DSEEEREVSQ KIITYDCEHV LSTLMDSVLF GYHERINLTT RENIEYLLSK 120
  121 QRIKHWKLGQ CDFVKYFQYS WENEDTILGP IYSIAKPFDE KFQWTWDDTS YPWTLNLVKY 180
  181 SDEITGELRY RKNMKGIKRK VEAKDVMTRI YPLGYGEGVN QLNIKSVNNG LPYIDAPDFV 240
  241 RELQDGFDYI WVDRRFEDPK TLYASAKAML LKACMPKVTY EIDAIDYELI DPYKIEKYET 300
  301 GKLVRLYDED FNISVDLRVM DRSKDDVTGN PLDVKLVLEN K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.92
Match:	1wruA
Description:	Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.715651839389854	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [342-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTDIGTIQAD IEKRQKVNEV YSQGTTNIDS QPFQDNCDPD HPAIIRFQIP NDVKNVNQLI  60
   61 LTFETLRFRA YERAIKGGGA VVASTSAGGA NVSSTSSGGG TVGSTSSGGS SVQASSSGGG 120
  121 TVKASSSGGD HVHKMFHGGG IVPAEPSTIG LYTAFSDPGR NTSASFYAKG TGSSFYTYGS 180
  181 SGNHTHDISI PNHTHSININ HKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: