YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260604, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260604, gi|....

Description	E-value	Query Range	Subject Range
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	6.0E-42	[1..262]	[387..659]
gi\|15920392, gi\|... - gi\|15920392\|ref\|NP_376061.1\| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7], gi\|15621174\|d...	2.0E-41	[1..267]	[298..573]
gi\|119524342, gi... - gi\|119719222\|ref\|YP_919717.1\| AAA family ATPase, CDC48 subfamily protein [Thermofilum pendens Hrk 5]...	4.0E-41	[1..267]	[369..645]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	6.0E-41	[1..262]	[368..638]
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	1.0E-40	[1..263]	[394..667]
gi\|49527427 - gi\|49527427\|emb\|CAG61067.1\| unnamed protein product [Candida glabrata] gi\|50291367, gi\|... - gi\|50291367\|ref\|XP_448116.1\| unnamed protein product [Candida glabrata], gi\|49527427\|emb\|CAG61067.1\|...	2.0E-40	[1..263]	[400..673]
cdc48 - AAA family ATPase Cdc48 CDC48_SCHPO - Cell division cycle protein 48 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc48 PE=1 ...	3.0E-40	[1..263]	[410..682]
gi\|7522545, gi\|2... - gi\|7522545\|pir\|\|T11652 probable transitional endoplasmic reticulum ATPase - fission yeast (Schizosac...	3.0E-40	[1..263]	[27..299]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRIVNTSAC SEETEGYTCE HCNKYIAAIT VEVPQLRIKN KILPTCECVV EREEAKIREA  60
   61 QNFAKKREIE KLFSISNLGE RFSKSTFESF LDRNGSETAY KVAVKYVKTF KEWNGESLML 120
  121 WGEPGNGKTH LAAAIVNELS KKGYIVVFQS VPELLQRIRS TFNSENKENE TQIMRALLEC 180
  181 DLLILDDIGA EKTTEWVEEK LFNIIDGRYR KELPTLYTSN LEPKELKNQV GKRSYDRMVE 240
  241 TSLTVKNEAA SYRREIAKQR LQRFIEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits