YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260600, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260600, gi|....

Description	E-value	Query Range	Subject Range
gi\|41398923, gi\|... - gi\|41410090\|ref\|NP_962926.1\| hypothetical protein MAP3992 [Mycobacterium avium subsp. paratuberculos...	95.0	[0..36]	[111..5]
gi\|15828311 - gi\|15828311\|ref\|NP_302574.1\| DNA-binding protein [Mycobacterium leprae TN] gi\|13094004, gi\|... - gi\|467073\|gb\|AAA17257.1\| B2168_C1_172 [Mycobacterium leprae], pir\|\|S72921 hypothetical protein B2168... gi\|221230788, gi... - gi\|221230788\|ref\|YP_002504204.1\| putative DNA-binding protein [Mycobacterium leprae Br4923], gi\|2199...	94.0	[0..36]	[111..5]
gi\|148720228, gi... - gi\|76785788\|ref\|ZP_00772952.1\| COG1910: Periplasmic molybdate-binding protein/domain [Mycobacterium ... gi\|81255595, gi\|... - gi\|81255595\|ref\|ZP_00880068.1\| COG1910: Periplasmic molybdate-binding protein/domain [Mycobacterium ... gi\|121636418, gi... - gi\|121636418\|ref\|YP_976641.1\| hypothetical protein BCG_0543 [Mycobacterium bovis BCG str. Pasteur 11... gi\|215410023 - gi\|215410023\|ref\|ZP_03418831.1\| hypothetical protein Mtub9_01572 [Mycobacterium tuberculosis 94_M424... gi\|215425733 - gi\|215425733\|ref\|ZP_03423652.1\| hypothetical protein MtubT9_04828 [Mycobacterium tuberculosis T92] Y500A_MYCTU - Putative DNA-binding protein Rv0500A OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv... gi\|215429325 - gi\|215429325\|ref\|ZP_03427244.1\| hypothetical protein MtubE_01187 [Mycobacterium tuberculosis EAS054] gi\|215444606 - gi\|215444606\|ref\|ZP_03431358.1\| hypothetical protein MtubT_01302 [Mycobacterium tuberculosis T85] gi\|218752137 - gi\|218752137\|ref\|ZP_03530933.1\| hypothetical protein MtubG1_01250 [Mycobacterium tuberculosis GM 150... gi\|219556326 - gi\|219556326\|ref\|ZP_03535402.1\| hypothetical protein MtubT1_03120 [Mycobacterium tuberculosis T17] gi\|253318934, gi... - gi\|253797431\|ref\|YP_003030432.1\| hypothetical protein TBMG_00506 [Mycobacterium tuberculosis KZN 143... gi\|167970675, gi... - gi\|167970675\|ref\|ZP_02552952.1\| hypothetical protein MtubH3_22620 [Mycobacterium tuberculosis H37Ra]... gi\|224772003, gi... - gi\|224988890\|ref\|YP_002643577.1\| hypothetical protein JTY_0513 [Mycobacterium bovis BCG str. Tokyo 1... gi\|254549451 - gi\|254549451\|ref\|ZP_05139898.1\| hypothetical protein Mtube_03148 [Mycobacterium tuberculosis '98-R60... gi\|254817330 - gi\|254817330\|ref\|ZP_05222331.1\| hypothetical protein MtubKZN_16737 [Mycobacterium tuberculosis KZN 4... gi\|255098301 - gi\|255098301\|ref\|ZP_05327779.1\| hypothetical protein MtubK_19485 [Mycobacterium tuberculosis KZN 605... Y500A_MYCTU - Putative DNA-binding protein Rv0500A/MT0521 OS=Mycobacterium tuberculosis GN=Rv0500A PE=4 SV=1 Y500A_MYCTO - Putative DNA-binding protein MT0521 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0... gi\|31791682, gi\|... - gi\|31791682\|ref\|NP_854175.1\| hypothetical protein Mb0512 [Mycobacterium bovis AF2122/97], gi\|3161726... gi\|215402264 - gi\|215402264\|ref\|ZP_03414445.1\| hypothetical protein Mtub0_00940 [Mycobacterium tuberculosis 02_1987...	88.0	[0..36]	[111..5]
gi\|92432499, gi\|... - gi\|92910411\|ref\|ZP_01279187.1\| Excisionase/Xis, DNA-binding [Mycobacterium sp. JLS], gi\|92432499\|gb\|... gi\|108797649, gi... - gi\|108797649\|ref\|YP_637846.1\| excisionase/Xis, DNA-binding protein [Mycobacterium sp. MCS], gi\|10876... gi\|119866736, gi... - gi\|92914906\|ref\|ZP_01283531.1\| Excisionase/Xis, DNA-binding [Mycobacterium sp. KMS], gi\|92440700\|gb\|...	88.0	[0..32]	[112..1]
gi\|90201567, gi\|... - gi\|90201567\|ref\|ZP_01204213.1\| Excisionase/Xis, DNA-binding [Mycobacterium vanbaalenii PYR-1], gi\|90...	86.0	[0..32]	[112..1]
gi\|145213166, gi... - gi\|89338686\|ref\|ZP_01191451.1\| Excisionase/Xis, DNA-binding [Mycobacterium flavescens PYR-GCK], gi\|8...	86.0	[0..32]	[112..1]
gi\|48861866, gi\|... - gi\|90022405\|ref\|YP_528232.1\| putative transcriptional regulator [Saccharophagus degradans 2-40], gi\|...	85.0	[0..64]	[116..5]
gi\|111615186, gi... - gi\|111615186\|ref\|ZP_01402253.1\| hypothetical protein VeisDRAFT_0741 [Verminephrobacter eiseniae EF01...	84.0	[0..55]	[112..42]
gi\|37197188, gi\|... - gi\|37678448\|ref\|NP_933057.1\| VrlI homologue [Vibrio vulnificus YJ016], gi\|37197188\|dbj\|BAC93028.1\| V... gi\|88773271, gi\|... - gi\|88795418\|ref\|ZP_01111115.1\| hypothetical protein MADE_10097 [Alteromonas macleodii 'Deep ecotype'...	83.0	[0..60]	[116..2]
gi\|82946214, gi\|... - gi\|83311373\|ref\|YP_421637.1\| molybdate-binding domain-containing protein [Magnetospirillum magneticu...	82.0	[0..56]	[116..2]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSTVQIAL AVTKFSAQKG WSDEEFWEAI ELLRFNKEDA RQTAIEKLDT IPVTYDNTND  60
   61 YPIMLKVDHV AEVLGISQRK AYDIMDQKGF PLVKIGRKKV VPRDAFFNWL ERGVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.17
Match:	1z4hA
Description:	The response regulator TorI belongs to a new family of atypical excisionase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits